6AVG | pdb_00006avg

Crystal structure of the KFJ37 TCR-NY-ESO-1-HLA-B*07:02 complex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth F]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054581 3000071 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyMHC antigen-recognition domain 8055662 3000521 SCOP2B (2022-06-29)
D [auth G]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054581 3000071 SCOP2B (2022-06-29)
D [auth G]SCOP2B SuperfamilyMHC antigen-recognition domain 8055662 3000521 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
A [auth H]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth F]e6avgF1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF:ECOD (v294.1)
D [auth G]e6avgG1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF:ECOD (v294.1)
G [auth E]e6avgE1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF:ECOD (v294.1)
C [auth D]NMTe6avgD1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: NMTECOD (v294.1)
F [auth B]e6avgB1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF:ECOD (v294.1)
B [auth C]NMTe6avgC1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: NMTECOD (v294.1)
E [auth A]e6avgA1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF:ECOD (v294.1)
A [auth H]e6avgH1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF:ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H [auth F]3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
H [auth F]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D [auth G]3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
D [auth G]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
G [auth E]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
C [auth D]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
F [auth B]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B [auth C]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
E [auth A]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
D [auth G],
H [auth F]		MH1 HLA-B*07:02 I-ALPHA Homo sapiens (human) HLA-B*0702, HLA-B*0704, HLA-B*0705, HLA-B*0706, HLA-B*0707, HLA-B*0709, HLA-B*0714, HLA-B*0718, HLA-B*4201, HLA-B*6701, HLA-B*0742, HLA-B*0744, HLA-B*4205, HLA-B*0733, HLA-B*4208, HLA-B*8102, HLA-B*0759, HLA-B*0761, HLA-B*0777 G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202611-0)
C [auth D],
G [auth E]		TRAV4* TRAJ21* -TRBV28* TRBJ2-3* and TRAV4* TRAJ8*-TRBV9* TR-BETA-2 Homo sapiens (human) TRBV9*01, TRBV9*03, TRBJ2-1*01, TRBJ2-1*02, TRBC2*01, TRBC2*02 V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 TR TR-ALPHA_BETA-2 IMGT (202611-0)
B [auth C],
F [auth B]		TRAV4* TRAJ21* -TRBV28* TRBJ2-3* and TRAV4* TRAJ8*-TRBV9* TR-ALPHA Homo sapiens (human) TRAV4*01, TRAJ8*01, TRAC*01 V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA TR TR-ALPHA_BETA-2 IMGT (202611-0)
A [auth H],
E [auth A]		MH1 HLA-B*07:02 B2M Homo sapiens (human) B2M*01, B2M*02 C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202611-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth G],
H [auth F]		PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
D [auth G],
H [auth F]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
C [auth D],
G [auth E]		PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain
B [auth C],
F [auth B]		PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain
A [auth H],
E [auth A]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth Q],
J [auth P]		ALA-PRO-ARG-GLY-PRO-HIS-GLY-GLY-ALA-ALA-SER-GLY-LEU
D [auth G],
H [auth F]		HLA class I histocompatibility antigen, B-7 alpha chain
C [auth D],
G [auth E]		T-cell receptor beta variable 9,TCR beta chain-
B [auth C],
F [auth B]		T-cell receptor alpha variable 4,TCR alpha chain-
A [auth H],
E [auth A]		Beta-2-microglobulin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth Q],
J [auth P]		IPR015419CTAG/Pcc1 familyFamily
D [auth G],
H [auth F]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
D [auth G],
H [auth F]		IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
D [auth G],
H [auth F]		IPR003597Immunoglobulin C1-setDomain
D [auth G],
H [auth F]		IPR010579MHC class I, alpha chain, C-terminalDomain
D [auth G],
H [auth F]		IPR011161MHC class I-like antigen recognition-likeDomain
D [auth G],
H [auth F]		IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
D [auth G],
H [auth F]		IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
D [auth G],
H [auth F]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
D [auth G],
H [auth F]		IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
D [auth G],
H [auth F]		IPR013783Immunoglobulin-like foldHomologous Superfamily
D [auth G],
H [auth F]		IPR007110Immunoglobulin-like domainDomain
C [auth D],
G [auth E]		IPR013783Immunoglobulin-like foldHomologous Superfamily
C [auth D],
G [auth E]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth D],
G [auth E]		IPR013106Immunoglobulin V-set domainDomain
C [auth D],
G [auth E]		IPR007110Immunoglobulin-like domainDomain
C [auth D],
G [auth E]		IPR050413T cell receptor beta variableFamily
B [auth C],
F [auth B]		IPR052051T cell receptor complex componentFamily
B [auth C],
F [auth B]		IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth C],
F [auth B]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth C],
F [auth B]		IPR013106Immunoglobulin V-set domainDomain
B [auth C],
F [auth B]		IPR007110Immunoglobulin-like domainDomain
A [auth H],
E [auth A]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth H],
E [auth A]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
A [auth H],
E [auth A]		IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth H],
E [auth A]		IPR007110Immunoglobulin-like domainDomain
A [auth H],
E [auth A]		IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
A [auth H],
E [auth A]		IPR003597Immunoglobulin C1-setDomain
A [auth H],
E [auth A]		IPR015707Beta-2-MicroglobulinFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth Q],
J [auth P]		Pharos:  P78358
D [auth G],
H [auth F]		Pharos:  P01889
C [auth D],
G [auth E]		Pharos:  A0A0B4J1U6
B [auth C],
F [auth B]		Pharos:  A0A0B4J268
A [auth H],
E [auth A]		Pharos:  P61769