Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth R]SCOP2B SuperfamilyvWA-like8082334 3000832 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF22663e6admA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22663ECOD (1.6)
B [auth C]PF00073e6admC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)
C [auth B]PF00073e6admB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)
E [auth R]PF00092e6admR1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: vWA-likeF: PF00092ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B [auth C]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C [auth B]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
E [auth R]3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth C]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
C [auth B]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
E [auth R]PF00092von Willebrand factor type A domain (VWA)von Willebrand factor type A domain- Domain
E [auth R]PF05587Anthrax receptor extracellular domain (Anth_Ig)Anthrax receptor extracellular domainThis region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to Pfam:PF01833 (personal obs: C Yeats).Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
VP1
B [auth C]VP3
C [auth B]VP2
VP4
E [auth R]Anthrax toxin receptor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
B [auth C]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth C]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth C]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth C]IPR001676Picornavirus capsidDomain
B [auth C]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth C]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth C]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth C]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth C]IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
B [auth C]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth C]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth C]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth C]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth C]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth C]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth C]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
C [auth B]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth B]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth B]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth B]IPR001676Picornavirus capsidDomain
C [auth B]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth B]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth B]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth B]IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
C [auth B]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth B]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth B]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth B]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth B]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth B]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth B]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR004004Helicase/polymerase/peptidase polyprotein, Calicivirus-typeFamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
E [auth R]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
E [auth R]IPR008400Anthrax toxin receptor, extracellular domainDomain
E [auth R]IPR008399Anthrax toxin receptor, C-terminalDomain
E [auth R]IPR002035von Willebrand factor, type ADomain