6A79
Crystal structure of the fifth immunoglobulin domain (Ig5) of human Robo1 in complex with the mutant scFv fragment (P103A) of murine monoclonal antibody B5209B
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth B] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8077369 | 3000071 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8077369 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth B] | PF13927 | e6a79B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF13927 | ECOD (1.6) |
A | PF13927 | e6a79A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF13927 | ECOD (1.6) |
B [auth L] | PF07686 | e6a79L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth M] | PF07686 | e6a79M1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth H] | PF07686 | e6a79H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth I] | PF07686 | e6a79I1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth L], E [auth M] | scFv B5209B, anti-human Robo1 | V-KAPPA | Mus musculus (house mouse) | IGKV12-89*01, IGKJ4*01 | V-DOMAIN V-KAPPA | IG | FV-HEAVY_KAPPA | IMGT (202416-0) |
C [auth H], F [auth I] | scFv B5209B, anti-human Robo1 | VH | Mus musculus (house mouse) | IGHV5-6-3*01, IGHJ4*01 | V-DOMAIN VH | IG | FV-HEAVY_KAPPA | IMGT (202416-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth L], E [auth M] | Light Chain | IGKV12 | Kappa | roundabout homolog 1 | SAbDab (2024-04-26) |
C [auth H], F [auth I] | Heavy Chain | IGHV5 | - | roundabout homolog 1 | SAbDab (2024-04-26) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B] | PF13927 | Immunoglobulin domain (Ig_3) | Immunoglobulin domain | This family contains immunoglobulin-like domains. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth B] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
A, D [auth B] | IPR003599 | Immunoglobulin subtype | Domain |
A, D [auth B] | IPR003598 | Immunoglobulin subtype 2 | Domain |
A, D [auth B] | IPR013106 | Immunoglobulin V-set domain | Domain |
A, D [auth B] | IPR013098 | Immunoglobulin I-set | Domain |
A, D [auth B] | IPR003961 | Fibronectin type III | Domain |
A, D [auth B] | IPR032986 | Roundabout homologue 1, immunoglobulin-like domain 3 | Domain |
A, D [auth B] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A, D [auth B] | IPR007110 | Immunoglobulin-like domain | Domain |
A, D [auth B] | IPR036116 | Fibronectin type III superfamily | Homologous Superfamily |