6A09 | pdb_00006a09

Salmonella Typhi YfdX in the P222 space group

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	C1-set	e6a09A1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: C1-set	ECOD (v294.1)
B	ubiquitin	e6a09B1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: ubiquitin	ECOD (v294.1)
C	ubiquitin	e6a09C1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: ubiquitin	ECOD (v294.1)
D	ubiquitin	e6a09D1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: ubiquitin	ECOD (v294.1)
E	ubiquitin	e6a09E1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: ubiquitin	ECOD (v294.1)
F	ubiquitin	e6a09F1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: ubiquitin	ECOD (v294.1)
G	ubiquitin	e6a09G1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: ubiquitin	ECOD (v294.1)
H	ubiquitin	e6a09H1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: ubiquitin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
A	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
B	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
C	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
D	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
E	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
E	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
F	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
F	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
G	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
G	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
H	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
H	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR021236	Uncharacterised protein family YfdX	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.