6ZZX | pdb_00006zzx

Structure of low-light grown Chlorella ohadii Photosystem I


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
I [auth J]d6zzxj_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit IX of photosystem I reaction centre, PsaJ automated matches automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
Fd6zzxf_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit III of photosystem I reaction centre, PsaF automated matches automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
Ed6zzxe_ All beta proteins SH3-like barrel Electron transport accessory proteins automated matches automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
Dd6zzxd_ Alpha and beta proteins (a+b) Photosystem I subunit PsaD Photosystem I subunit PsaD Photosystem I subunit PsaD automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
Cd6zzxc_ Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins 7-Fe ferredoxin automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
X [auth 9]d6zzx9_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
V [auth 8]d6zzx8_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
U [auth 7]d6zzx7_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
Bd6zzxb_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
R [auth 4]d6zzx4_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
O [auth 1]d6zzx1_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
K [auth L]d6zzxl_ Membrane and cell surface proteins and peptides Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL automated matches automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)
Ad6zzxa_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches (Chlorella ohadii ) [TaxId: 2649997 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth J]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8104043 3000824 SCOP2B (2022-06-29)
HSCOP2 FamilyPhotosystem I reaction centre subunit VI 8103802 4007266 SCOP2 (2022-06-29)
HSCOP2 SuperfamilyPhotosystem I reaction centre subunit VI 8103803 3002733 SCOP2 (2022-06-29)
FSCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8103805 3000813 SCOP2B (2022-06-29)
ESCOP2 FamilyPhotosystem I accessory protein E (PsaE) 8103816 4001749 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyElectron transport accessory proteins 8103817 3000325 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD 8103795 3000951 SCOP2B (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins 8104039 3000020 SCOP2B (2022-06-29)
X [auth 9]SCOP2 FamilyChlorophyll a-b binding protein 8103796 4001763 SCOP2 (2022-06-29)
X [auth 9]SCOP2 SuperfamilyChlorophyll a-b binding protein 8103797 3000343 SCOP2 (2022-06-29)
W [auth 2]SCOP2B SuperfamilyChlorophyll a-b binding protein 8103799 3000343 SCOP2B (2022-06-29)
V [auth 8]SCOP2B SuperfamilyChlorophyll a-b binding protein 8103813 3000343 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8104041 3000850 SCOP2B (2022-06-29)
T [auth 6]SCOP2B SuperfamilyChlorophyll a-b binding protein 8103801 3000343 SCOP2B (2022-06-29)
S [auth 5]SCOP2 FamilyChlorophyll a-b binding protein 8103814 4001763 SCOP2 (2022-06-29)
S [auth 5]SCOP2 SuperfamilyChlorophyll a-b binding protein 8103815 3000343 SCOP2 (2022-06-29)
P [auth a]SCOP2B SuperfamilyChlorophyll a-b binding protein 8103811 3000343 SCOP2B (2022-06-29)
O [auth 1]SCOP2B SuperfamilyChlorophyll a-b binding protein 8103811 3000343 SCOP2B (2022-06-29)
M [auth I]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8104037 3000819 SCOP2B (2022-06-29)
K [auth L]SCOP2 FamilyPhotosystem I reaction center subunit XI, PsaL 8103792 4002135 SCOP2 (2022-06-29)
K [auth L]SCOP2 SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8103793 3000870 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8104045 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth J]Enolase_Ne6zzxJ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
HEnolase_Ne6zzxH1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
GEnolase_Ne6zzxG1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
FEnolase_Ne6zzxF1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
EEnolase_Ne6zzxE1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
DEnolase_Ne6zzxD1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
CEnolase_Ne6zzxC1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
X [auth 9]Enolase_Ne6zzx91 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
W [auth 2]RF-1e6zzx201 A: a/b three-layered sandwichesX: Rossmann-likeH: all-alpha NTP pyrophosphatasesT: Hypothetical protein AF_0060F: RF-1ECOD (v294.1)
V [auth 8]Enolase_Ne6zzx81 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
U [auth 7]Enolase_Ne6zzx71 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
BEnolase_Ne6zzxB1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
T [auth 6]Glyco_transf_41e6zzx61 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
S [auth 5]Glyco_transf_41e6zzx51 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
R [auth 4]Enolase_Ne6zzx41 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
Q [auth 3]Enolase_Ne6zzx31 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
P [auth a]Trypsine6zzxa1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (v294.1)
O [auth 1]Enolase_Ne6zzx11 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
M [auth I]Enolase_Ne6zzxI1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
L [auth M]Enolase_Ne6zzxM1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
K [auth L]Enolase_Ne6zzxL1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
J [auth K]Enolase_Ne6zzxK1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)
AEnolase_Ne6zzxA1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Enolase_NECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03244Photosystem I reaction centre subunit VI (PSI_PsaH)Photosystem I reaction centre subunit VI- Family
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
PF02531PsaD (PsaD)PsaD- Family
X [auth 9]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
W [auth 2]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
V [auth 8]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
T [auth 6]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
S [auth 5]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
Q [auth 3]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
O [auth 1],
P [auth a]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
N [auth O]PF22832PsaO transmembrane domain (PsaO_TMD)PsaO transmembrane domainPsaO is one of the nine membrane-embedded subunits of photosystem I. This entry represents the transmembrane domain that was shown to consists of three transmembrane helices arranged in an L-shape [1]. Domain
K [auth L]PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
J [auth K]PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth J]Photosystem I reaction center subunit IX-
Photosystem I reaction center subunit VI-chloroplastic-like-
Photosystem I reaction center subunit chloroplastic-
PSI-F-
Photosystem I reaction center subunit IV-
Photosystem I reaction center subunit chloroplastic
Photosystem I iron-sulfur center
X [auth 9]Chlorophyll a-b binding protein, chloroplastic
W [auth 2]Chlorophyll a-b binding protein, chloroplastic
V [auth 8]Chlorophyll a-b binding protein, chloroplastic
U [auth 7]Lhca7---
Photosystem I P700 chlorophyll a apoprotein A2
T [auth 6]Chlorophyll a-b binding protein, chloroplastic
S [auth 5]Chlorophyll a-b binding protein, chloroplastic
R [auth 4]Lhca4---
Q [auth 3]Glutathione reductase
O [auth 1],
P [auth a]
Chlorophyll a-b binding protein, chloroplastic
N [auth O]Photosystem I subunit O- - -
M [auth I]Photosystem I reaction center subunit VIII-
L [auth M]Photosystem I reaction center subunit XII-
K [auth L]Photosystem I reaction center subunit XI
J [auth K]Photosystem I reaction center subunit chloroplastic-
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth J]IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
I [auth J]IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR020966Aluminum-activated malate transporterFamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR021420Protein of unknown function DUF3067Family
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR050157Photosystem I iron-sulfur centerFamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
X [auth 9]IPR017441Protein kinase, ATP binding siteBinding Site
X [auth 9]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
X [auth 9]IPR022796Chlorophyll A-B binding proteinFamily
X [auth 9]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
X [auth 9]IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
X [auth 9]IPR000719Protein kinase domainDomain
X [auth 9]IPR008271Serine/threonine-protein kinase, active siteActive Site
W [auth 2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
W [auth 2]IPR022796Chlorophyll A-B binding proteinFamily
V [auth 8]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
V [auth 8]IPR022796Chlorophyll A-B binding proteinFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
T [auth 6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
T [auth 6]IPR022796Chlorophyll A-B binding proteinFamily
S [auth 5]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
S [auth 5]IPR022796Chlorophyll A-B binding proteinFamily
Q [auth 3]IPR004099Pyridine nucleotide-disulphide oxidoreductase, dimerisation domainDomain
Q [auth 3]IPR046952Glutathione reductase/thioredoxin reductase-likeFamily
Q [auth 3]IPR022796Chlorophyll A-B binding proteinFamily
Q [auth 3]IPR016156FAD/NAD-linked reductase, dimerisation domain superfamilyHomologous Superfamily
Q [auth 3]IPR036188FAD/NAD(P)-binding domain superfamilyHomologous Superfamily
Q [auth 3]IPR001128Cytochrome P450Family
Q [auth 3]IPR023753FAD/NAD(P)-binding domainDomain
Q [auth 3]IPR012999Pyridine nucleotide-disulphide oxidoreductase, class I, active siteActive Site
Q [auth 3]IPR036396Cytochrome P450 superfamilyHomologous Superfamily
O [auth 1],
P [auth a]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth 1],
P [auth a]
IPR022796Chlorophyll A-B binding proteinFamily
N [auth O]IPR017498Photosystem I PsaOFamily
M [auth I]IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
M [auth I]IPR001302Photosystem I reaction centre subunit VIIIFamily
L [auth M]IPR010010Photosystem I PsaM, reaction centreFamily
L [auth M]IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
K [auth L]IPR016181Acyl-CoA N-acyltransferaseHomologous Superfamily
K [auth L]IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
K [auth L]IPR022980Photosystem I, reaction centre subunit XIFamily
K [auth L]IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
K [auth L]IPR000182GNAT domainDomain
J [auth K]IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
J [auth K]IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
J [auth K]IPR000549Photosystem I reaction center subunit V/PsaKFamily
J [auth K]IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site

Membrane Protein Annotation: OPM OPM Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage