6ZXJ | pdb_00006zxj

Fully-loaded anthrax lethal toxin in its heptameric pre-pore state, in which the third lethal factor is masked out (PA7LF3-masked)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8036789	3001975	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8036791	3001975	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ADP-ribosylation	8036792	3001208	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8036791	3001975	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8036789	3001975	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ADP-ribosylation	8036792	3001208	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Anthrax PA domain 3-like	8054212	3000301	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GLEYA/PA14-like	8054210	3002282	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	FIP-like	8054214	3002056	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Anthrax PA domain 3-like	8054212	3000301	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FIP-like	8054214	3002056	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GLEYA/PA14-like	8054210	3002282	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GLEYA/PA14-like	8054210	3002282	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Anthrax PA domain 3-like	8054212	3000301	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	FIP-like	8054214	3002056	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Anthrax PA domain 3-like	8054212	3000301	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	FIP-like	8054214	3002056	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GLEYA/PA14-like	8054210	3002282	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Anthrax PA domain 3-like	8054212	3000301	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	FIP-like	8054214	3002056	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GLEYA/PA14-like	8054210	3002282	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GLEYA/PA14-like	8054210	3002282	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Anthrax PA domain 3-like	8054212	3000301	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	FIP-like	8054214	3002056	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GLEYA/PA14-like	8054210	3002282	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	FIP-like	8054214	3002056	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Anthrax PA domain 3-like	8054212	3000301	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	Anthrax-tox_M	e6zxjI3	A: a+b complex topology	X: ADP-ribosylation (From Topology)	H: ADP-ribosylation (From Topology)	T: ADP-ribosylation	F: Anthrax-tox_M	ECOD (1.6)
I	ATLF	e6zxjI1	A: mixed a+b and a/b	X: Zincin-like	H: Metalloproteases (zincins) catalytic domain (From Topology)	T: Metalloproteases (zincins) catalytic domain	F: ATLF	ECOD (1.6)
H	Anthrax-tox_M	e6zxjH1	A: a+b complex topology	X: ADP-ribosylation (From Topology)	H: ADP-ribosylation (From Topology)	T: ADP-ribosylation	F: Anthrax-tox_M	ECOD (1.6)
H	ATLF	e6zxjH3	A: mixed a+b and a/b	X: Zincin-like	H: Metalloproteases (zincins) catalytic domain (From Topology)	T: Metalloproteases (zincins) catalytic domain	F: ATLF	ECOD (1.6)
A	Binary_toxB_2	e6zxjA3	A: beta sandwiches	X: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	H: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	T: Middle beta-sandwich domain in anthrax protective antigen	F: Binary_toxB_2	ECOD (1.6)
A	EUF07840	e6zxjA4	A: beta sandwiches	X: Ig-like domain in anthrax protective antigen (From Topology)	H: Ig-like domain in anthrax protective antigen (From Topology)	T: Ig-like domain in anthrax protective antigen	F: EUF07840	ECOD (1.6)
A	Binary_toxB_3	e6zxjA1	A: a+b two layers	X: beta-grasp domain in anthrax protective antigen (From Topology)	H: beta-grasp domain in anthrax protective antigen (From Topology)	T: beta-grasp domain in anthrax protective antigen	F: Binary_toxB_3	ECOD (1.6)
A	Binary_toxB	e6zxjA2	A: few secondary structure elements	X: Ca-binding domain in anthrax protective antigen (From Topology)	H: Ca-binding domain in anthrax protective antigen (From Topology)	T: Ca-binding domain in anthrax protective antigen	F: Binary_toxB	ECOD (1.6)
B	Binary_toxB_2	e6zxjB2	A: beta sandwiches	X: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	H: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	T: Middle beta-sandwich domain in anthrax protective antigen	F: Binary_toxB_2	ECOD (1.6)
B	EUF07840	e6zxjB3	A: beta sandwiches	X: Ig-like domain in anthrax protective antigen (From Topology)	H: Ig-like domain in anthrax protective antigen (From Topology)	T: Ig-like domain in anthrax protective antigen	F: EUF07840	ECOD (1.6)
B	Binary_toxB_3	e6zxjB1	A: a+b two layers	X: beta-grasp domain in anthrax protective antigen (From Topology)	H: beta-grasp domain in anthrax protective antigen (From Topology)	T: beta-grasp domain in anthrax protective antigen	F: Binary_toxB_3	ECOD (1.6)
B	Binary_toxB	e6zxjB4	A: few secondary structure elements	X: Ca-binding domain in anthrax protective antigen (From Topology)	H: Ca-binding domain in anthrax protective antigen (From Topology)	T: Ca-binding domain in anthrax protective antigen	F: Binary_toxB	ECOD (1.6)
D	Binary_toxB_2	e6zxjD4	A: beta sandwiches	X: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	H: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	T: Middle beta-sandwich domain in anthrax protective antigen	F: Binary_toxB_2	ECOD (1.6)
D	EUF07840	e6zxjD1	A: beta sandwiches	X: Ig-like domain in anthrax protective antigen (From Topology)	H: Ig-like domain in anthrax protective antigen (From Topology)	T: Ig-like domain in anthrax protective antigen	F: EUF07840	ECOD (1.6)
D	Binary_toxB_3	e6zxjD3	A: a+b two layers	X: beta-grasp domain in anthrax protective antigen (From Topology)	H: beta-grasp domain in anthrax protective antigen (From Topology)	T: beta-grasp domain in anthrax protective antigen	F: Binary_toxB_3	ECOD (1.6)
D	Binary_toxB	e6zxjD2	A: few secondary structure elements	X: Ca-binding domain in anthrax protective antigen (From Topology)	H: Ca-binding domain in anthrax protective antigen (From Topology)	T: Ca-binding domain in anthrax protective antigen	F: Binary_toxB	ECOD (1.6)
G	Binary_toxB_2	e6zxjG4	A: beta sandwiches	X: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	H: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	T: Middle beta-sandwich domain in anthrax protective antigen	F: Binary_toxB_2	ECOD (1.6)
G	EUF07840	e6zxjG2	A: beta sandwiches	X: Ig-like domain in anthrax protective antigen (From Topology)	H: Ig-like domain in anthrax protective antigen (From Topology)	T: Ig-like domain in anthrax protective antigen	F: EUF07840	ECOD (1.6)
G	Binary_toxB_3	e6zxjG1	A: a+b two layers	X: beta-grasp domain in anthrax protective antigen (From Topology)	H: beta-grasp domain in anthrax protective antigen (From Topology)	T: beta-grasp domain in anthrax protective antigen	F: Binary_toxB_3	ECOD (1.6)
G	Binary_toxB	e6zxjG3	A: few secondary structure elements	X: Ca-binding domain in anthrax protective antigen (From Topology)	H: Ca-binding domain in anthrax protective antigen (From Topology)	T: Ca-binding domain in anthrax protective antigen	F: Binary_toxB	ECOD (1.6)
F	Binary_toxB_2	e6zxjF3	A: beta sandwiches	X: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	H: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	T: Middle beta-sandwich domain in anthrax protective antigen	F: Binary_toxB_2	ECOD (1.6)
F	EUF07840	e6zxjF4	A: beta sandwiches	X: Ig-like domain in anthrax protective antigen (From Topology)	H: Ig-like domain in anthrax protective antigen (From Topology)	T: Ig-like domain in anthrax protective antigen	F: EUF07840	ECOD (1.6)
F	Binary_toxB_3	e6zxjF1	A: a+b two layers	X: beta-grasp domain in anthrax protective antigen (From Topology)	H: beta-grasp domain in anthrax protective antigen (From Topology)	T: beta-grasp domain in anthrax protective antigen	F: Binary_toxB_3	ECOD (1.6)
F	Binary_toxB	e6zxjF2	A: few secondary structure elements	X: Ca-binding domain in anthrax protective antigen (From Topology)	H: Ca-binding domain in anthrax protective antigen (From Topology)	T: Ca-binding domain in anthrax protective antigen	F: Binary_toxB	ECOD (1.6)
E	Binary_toxB_2	e6zxjE3	A: beta sandwiches	X: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	H: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	T: Middle beta-sandwich domain in anthrax protective antigen	F: Binary_toxB_2	ECOD (1.6)
E	EUF07840	e6zxjE2	A: beta sandwiches	X: Ig-like domain in anthrax protective antigen (From Topology)	H: Ig-like domain in anthrax protective antigen (From Topology)	T: Ig-like domain in anthrax protective antigen	F: EUF07840	ECOD (1.6)
E	Binary_toxB_3	e6zxjE4	A: a+b two layers	X: beta-grasp domain in anthrax protective antigen (From Topology)	H: beta-grasp domain in anthrax protective antigen (From Topology)	T: beta-grasp domain in anthrax protective antigen	F: Binary_toxB_3	ECOD (1.6)
E	Binary_toxB	e6zxjE1	A: few secondary structure elements	X: Ca-binding domain in anthrax protective antigen (From Topology)	H: Ca-binding domain in anthrax protective antigen (From Topology)	T: Ca-binding domain in anthrax protective antigen	F: Binary_toxB	ECOD (1.6)
C	Binary_toxB_2	e6zxjC1	A: beta sandwiches	X: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	H: Middle beta-sandwich domain in anthrax protective antigen (From Topology)	T: Middle beta-sandwich domain in anthrax protective antigen	F: Binary_toxB_2	ECOD (1.6)
C	EUF07840	e6zxjC2	A: beta sandwiches	X: Ig-like domain in anthrax protective antigen (From Topology)	H: Ig-like domain in anthrax protective antigen (From Topology)	T: Ig-like domain in anthrax protective antigen	F: EUF07840	ECOD (1.6)
C	Binary_toxB_3	e6zxjC3	A: a+b two layers	X: beta-grasp domain in anthrax protective antigen (From Topology)	H: beta-grasp domain in anthrax protective antigen (From Topology)	T: beta-grasp domain in anthrax protective antigen	F: Binary_toxB_3	ECOD (1.6)
C	Binary_toxB	e6zxjC4	A: few secondary structure elements	X: Ca-binding domain in anthrax protective antigen (From Topology)	H: Ca-binding domain in anthrax protective antigen (From Topology)	T: Ca-binding domain in anthrax protective antigen	F: Binary_toxB	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
H, I	PF09156	Anthrax toxin lethal factor, middle domain (Anthrax-tox_M)	Anthrax toxin lethal factor, middle domain	Members of this family, which are predominantly found in anthrax toxin lethal factor, adopt a structure consisting of a core of antiparallel beta sheets and alpha helices. They form a long deep groove within the protein that anchors the 16-residue N- ...	Members of this family, which are predominantly found in anthrax toxin lethal factor, adopt a structure consisting of a core of antiparallel beta sheets and alpha helices. They form a long deep groove within the protein that anchors the 16-residue N-terminal tail of MAPKK-2 before cleavage. It has been noted that this domain resembles the ADP-ribosylating toxin from Bacillus cereus, but the active site has been modified to augment substrate recognition [1].	Domain
H, I	PF07737	Anthrax toxin lethal factor, N- and C-terminal domain (ATLF)	Anthrax toxin lethal factor, N- and C-terminal domain	The C-terminal domain is the catalytically active domain whereas the N-terminal domain is likely to be inactive.	Domain
A, B, C, D, E A, B, C, D, E, F, G	PF17475	Clostridial binary toxin B/anthrax toxin PA domain 2 (Binary_toxB_2)	Clostridial binary toxin B/anthrax toxin PA domain 2	This domain forms the middle beta sandwish domain in anthrax toxin.	Domain
A, B, C, D, E A, B, C, D, E, F, G	PF03495	Clostridial binary toxin B/anthrax toxin PA Ca-binding domain (Binary_toxB)	Clostridial binary toxin B/anthrax toxin PA Ca-binding domain	This domain is a calcium binding domain in the anthrax toxin protective antigen.	Domain
A, B, C, D, E A, B, C, D, E, F, G	PF17476	Clostridial binary toxin B/anthrax toxin PA domain 3 (Binary_toxB_3)	Clostridial binary toxin B/anthrax toxin PA domain 3	This entry represents the beta-grasp domain in anthrax protective antigen.	Domain
A, B, C, D, E A, B, C, D, E, F, G	PF20835	Anthrax protective antigen, immunoglobulin-like domain (PA_Ig-like)	Anthrax protective antigen, immunoglobulin-like domain	Anthrax protective antigen (PA) is one of the three proteins forming the anthrax toxin. It is involved in the first step of toxin entry into host cells, enabling lethal factor (LF) and oedema factor (EF) to cross to the cytosol. PA undergoes cleavage ...	Anthrax protective antigen (PA) is one of the three proteins forming the anthrax toxin. It is involved in the first step of toxin entry into host cells, enabling lethal factor (LF) and oedema factor (EF) to cross to the cytosol. PA undergoes cleavage by Furin to generate PA20 and PA63. The latter, which adopts a ring-shaped heptameric assembly, shows four distinct domains. The fourth domain, a carboxy- terminal receptor-binding domain, shows an initial hairpin and helix, followed by a beta-sandwich with an immunoglobulin-like fold (this entry) [1-5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H, I	Lethal factor	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding metalloendopeptidase activity endopeptidase activity peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding metalloendopeptidase activity endopeptidase activity toxin activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure extracellular region host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region host cell cytosol other organism part host cell cytoplasm part
A, B, C, D, E A, B, C, D, E, F, G	Protective antigen	toxin activity cation binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host MAPK cascade symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host MAPK cascade symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated suppression of host MAPK cascade biological process involved in interaction with host biological process involved in symbiotic interaction	cellular anatomical structure membrane extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell membrane other organism part host cell cytoplasm part host intracellular organelle host cell endosome membrane host cell cytoplasm host cell part host cell endosome cellular anatomical structure membrane extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell membrane other organism part host cell cytoplasm part host intracellular organelle host cell endosome membrane host cell cytoplasm host cell part host cell endosome host intracellular region host cell plasma membrane host cell cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H, I	IPR024079	Metallopeptidase, catalytic domain superfamily	Homologous Superfamily
H, I	IPR047568	Anthrax toxin lethal factor-like domain	Domain
H, I	IPR003541	Anthrax toxin, lethal/endema factor	Family
H, I	IPR014781	Anthrax toxin, lethal/endema factor, N-/C-terminal	Domain
H, I	IPR015239	Anthrax toxin lethal factor, central domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR035331	Clostridial binary toxin B/anthrax toxin PA, domain 3	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR048853	Anthrax protective antigen, immunoglobulin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR011658	PA14 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR027439	Protective antigen, heptamerisation domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR035088	Protective antigen, Ca-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR037524	PA14/GLEYA domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR037149	Protective antigen, heptamerisation domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR003896	Bacterial exotoxin B	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR027441	Protective antigen, domain 4	Homologous Superfamily