6ZVR | pdb_00006zvr

C11 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth AB]	MIF	e6zvrAB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
Z [auth AA]	MIF	e6zvrAA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
YA [auth ZA]	MIF	e6zvrZA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
Y [auth Z]	Glyco_transf_41	e6zvrZ1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
XA [auth YA]	Glyco_transf_41	e6zvrYA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
X [auth Y]	MIF	e6zvrY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
WA [auth XA]	MIF	e6zvrXA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
W [auth X]	MIF	e6zvrX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
VA [auth WA]	MIF	e6zvrWA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
V [auth W]	MIF	e6zvrW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
UA [auth VA]	MIF	e6zvrVA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
U [auth V]	MIF	e6zvrV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
TA [auth UA]	MIF	e6zvrUA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
T	Glyco_transf_41	e6zvrT1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
SA [auth TA]	Glyco_transf_41	e6zvrTA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
S	MIF	e6zvrS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
RA [auth SA]	MIF	e6zvrSA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
R	MIF	e6zvrR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
QA [auth RA]	MIF	e6zvrRA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
Q	MIF	e6zvrQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
PA [auth QA]	MIF	e6zvrQA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
P	MIF	e6zvrP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
OA [auth PA]	MIF	e6zvrPA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
O	Glyco_transf_41	e6zvrO1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
NA [auth OA]	Glyco_transf_41	e6zvrOA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
N	MIF	e6zvrN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
MA [auth NA]	MIF	e6zvrNA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
M	MIF	e6zvrM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
LA [auth MA]	MIF	e6zvrMA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
L	MIF	e6zvrL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
KA [auth LA]	MIF	e6zvrLA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
K	MIF	e6zvrK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
JA [auth KA]	MIF	e6zvrKA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
J	Glyco_transf_41	e6zvrJ1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
IA [auth JA]	Glyco_transf_41	e6zvrJA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
I	MIF	e6zvrI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
HA [auth IA]	MIF	e6zvrIA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
H	MIF	e6zvrH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
GA [auth HA]	MIF	e6zvrHA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
G	MIF	e6zvrG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
FA [auth GA]	MIF	e6zvrGA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
F [auth A]	MIF	e6zvrA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
EA [auth FA]	MIF	e6zvrFA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
E [auth F]	Glyco_transf_41	e6zvrF1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
DA [auth EA]	Glyco_transf_41	e6zvrEA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
D [auth E]	MIF	e6zvrE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
CB [auth DB]	Glyco_transf_41	e6zvrDB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
CA [auth DA]	MIF	e6zvrDA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
C [auth D]	MIF	e6zvrD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
BB [auth CB]	MIF	e6zvrCB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
BA [auth CA]	MIF	e6zvrCA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
B [auth C]	MIF	e6zvrC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
AB [auth BB]	MIF	e6zvrBB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
AA [auth BA]	MIF	e6zvrBA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
A [auth B]	MIF	e6zvrB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], AA [auth BA], AB [auth BB], B [auth C], BA [auth CA], A [auth B], AA [auth BA], AB [auth BB], B [auth C], BA [auth CA], BB [auth CB], C [auth D], CA [auth DA], CB [auth DB], D [auth E], DA [auth EA], E [auth F], EA [auth FA], F [auth A], FA [auth GA], G, GA [auth HA], H, HA [auth IA], I, IA [auth JA], J, JA [auth KA], K, KA [auth LA], L, LA [auth MA], M, MA [auth NA], N, NA [auth OA], O, OA [auth PA], P, PA [auth QA], Q, QA [auth RA], R, RA [auth SA], S, SA [auth TA], T, TA [auth UA], U [auth V], UA [auth VA], V [auth W], VA [auth WA], W [auth X], WA [auth XA], X [auth Y], XA [auth YA], Y [auth Z], YA [auth ZA], Z [auth AA], ZA [auth AB]	PF04012	PspA/IM30 family (PspA_IM30)	PspA/IM30 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], AA [auth BA], AB [auth BB], B [auth C], BA [auth CA], A [auth B], AA [auth BA], AB [auth BB], B [auth C], BA [auth CA], BB [auth CB], C [auth D], CA [auth DA], CB [auth DB], D [auth E], DA [auth EA], E [auth F], EA [auth FA], F [auth A], FA [auth GA], G, GA [auth HA], H, HA [auth IA], I, IA [auth JA], J, JA [auth KA], K, KA [auth LA], L, LA [auth MA], M, MA [auth NA], N, NA [auth OA], O, OA [auth PA], P, PA [auth QA], Q, QA [auth RA], R, RA [auth SA], S, SA [auth TA], T, TA [auth UA], U [auth V], UA [auth VA], V [auth W], VA [auth WA], W [auth X], WA [auth XA], X [auth Y], XA [auth YA], Y [auth Z], YA [auth ZA], Z [auth AA], ZA [auth AB]	Vipp1	binding lipid binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], AA [auth BA], AB [auth BB], B [auth C], BA [auth CA], A [auth B], AA [auth BA], AB [auth BB], B [auth C], BA [auth CA], BB [auth CB], C [auth D], CA [auth DA], CB [auth DB], D [auth E], DA [auth EA], E [auth F], EA [auth FA], F [auth A], FA [auth GA], G, GA [auth HA], H, HA [auth IA], I, IA [auth JA], J, JA [auth KA], K, KA [auth LA], L, LA [auth MA], M, MA [auth NA], N, NA [auth OA], O, OA [auth PA], P, PA [auth QA], Q, QA [auth RA], R, RA [auth SA], S, SA [auth TA], T, TA [auth UA], U [auth V], UA [auth VA], V [auth W], VA [auth WA], W [auth X], WA [auth XA], X [auth Y], XA [auth YA], Y [auth Z], YA [auth ZA], Z [auth AA], ZA [auth AB]	IPR007157	PspA/VIPP1	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.