6ZQJ | pdb_00006zqj

Cryo-EM structure of trimeric prME spike of Spondweni virus

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth H]Flavi_propepe6zqjH1 A: beta sandwichesX: HSP40/DnaJ peptide-binding domain (From Topology)H: HSP40/DnaJ peptide-binding domain (From Topology)T: HSP40/DnaJ peptide-binding domainF: Flavi_propepECOD (1.6)
I [auth C]Flavi_Me6zqjC1 A: extended segmentsX: Small envelope protein M (From Topology)H: Small envelope protein M (From Topology)T: Small envelope protein MF: Flavi_MECOD (1.6)
H [auth F]Flavi_Me6zqjF1 A: extended segmentsX: Small envelope protein M (From Topology)H: Small envelope protein M (From Topology)T: Small envelope protein MF: Flavi_MECOD (1.6)
G [auth I]Flavi_Me6zqjI1 A: extended segmentsX: Small envelope protein M (From Topology)H: Small envelope protein M (From Topology)T: Small envelope protein MF: Flavi_MECOD (1.6)
D [auth E]Flavi_propepe6zqjE1 A: beta sandwichesX: HSP40/DnaJ peptide-binding domain (From Topology)H: HSP40/DnaJ peptide-binding domain (From Topology)T: HSP40/DnaJ peptide-binding domainF: Flavi_propepECOD (1.6)
BFlavi_propepe6zqjB1 A: beta sandwichesX: HSP40/DnaJ peptide-binding domain (From Topology)H: HSP40/DnaJ peptide-binding domain (From Topology)T: HSP40/DnaJ peptide-binding domainF: Flavi_propepECOD (1.6)
AFlavi_glycop_Ce6zqjA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Flavi_glycop_CECOD (1.6)
AFlavi_glycoprote6zqjA3 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Flavi_glycoprotECOD (1.6)
Aflavi_E_steme6zqjA2 A: alpha arraysX: Transmembrane domain of envelope protein E (From Topology)H: Transmembrane domain of envelope protein E (From Topology)T: Transmembrane domain of envelope protein EF: flavi_E_stemECOD (1.6)
E [auth G]Flavi_glycop_Ce6zqjG1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Flavi_glycop_CECOD (1.6)
E [auth G]Flavi_glycoprote6zqjG2 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Flavi_glycoprotECOD (1.6)
E [auth G]flavi_E_steme6zqjG3 A: alpha arraysX: Transmembrane domain of envelope protein E (From Topology)H: Transmembrane domain of envelope protein E (From Topology)T: Transmembrane domain of envelope protein EF: flavi_E_stemECOD (1.6)
C [auth D]Flavi_glycop_Ce6zqjD3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Flavi_glycop_CECOD (1.6)
C [auth D]Flavi_glycoprote6zqjD1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Flavi_glycoprotECOD (1.6)
C [auth D]flavi_E_steme6zqjD2 A: alpha arraysX: Transmembrane domain of envelope protein E (From Topology)H: Transmembrane domain of envelope protein E (From Topology)T: Transmembrane domain of envelope protein EF: flavi_E_stemECOD (1.6)