6ZQD | pdb_00006zqd

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
X [auth CA]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
Y [auth CB]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
JA [auth CN]SCOP2B SuperfamilyRRP7 C-terminal domain-like 8053722 3002219 SCOP2B (2022-06-29)
JA [auth CN]SCOP2B SuperfamilyRNA-binding domain, RBD 8053724 3000110 SCOP2B (2022-06-29)
UA [auth DA]SCOP2B SuperfamilyRibosomal S3Ae-like 8053211 3002166 SCOP2B (2022-06-29)
WA [auth DF]SCOP2B SuperfamilyRibosomal protein S7 8065999 3000799 SCOP2B (2022-06-29)
ZA [auth DI]SCOP2B Superfamily50S Ribosomal protein L14-like 8053083 3000433 SCOP2B (2022-06-29)
KB [auth Dc]SCOP2B SuperfamilyNucleic acid-binding proteins 8063430 3000135 SCOP2B (2022-06-29)
HB [auth DW]SCOP2B SuperfamilyRibosomal protein S8 8096922 3000709 SCOP2B (2022-06-29)
EB [auth DQ]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)
DB [auth DO]SCOP2B SuperfamilyTranslational machinery components 8095805 3000571 SCOP2B (2022-06-29)
CB [auth DN]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052974 3001284 SCOP2B (2022-06-29)
CB [auth DN]SCOP2B SuperfamilyHomeodomain-like 8052973 3000001 SCOP2B (2022-06-29)
BB [auth DL]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)
BB [auth DL]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052736 3002138 SCOP2B (2022-06-29)
XA [auth DG]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
VA [auth DE]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
VA [auth DE]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
VA [auth DE]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
LA [auth JF]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
MA [auth JG]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
BA [auth CF]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
CA [auth CG]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
V [auth UV]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8053727 3000941 SCOP2B (2022-06-29)
V [auth UV]SCOP2B SuperfamilyNucleotidyltransferase-like 8053726 3000129 SCOP2B (2022-06-29)
V [auth UV]SCOP2B SuperfamilyNucleotidyltransferase-like 8053725 3000129 SCOP2B (2022-06-29)
V [auth UV]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like 8053730 3001147 SCOP2B (2022-06-29)
V [auth UV]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8053728 3000941 SCOP2B (2022-06-29)
V [auth UV]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like 8053729 3001147 SCOP2B (2022-06-29)
M [auth UM]SCOP2B SuperfamilyUTPB complex component-like 8061270 3002330 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
X [auth CA]Ribosomal_L21pe6zqdCA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
Y [auth CB]Ribosomal_L21pe6zqdCB1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
Z [auth CD]Ribosomal_L21pe6zqdCD1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
JA [auth CN]BNR, BNR_2e6zqdCN1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: BNR, BNR_2ECOD (v294.1)
NA [auth JH]Ribosomal_L21pe6zqdJH1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
UA [auth DA]Ribosomal_L21pe6zqdDA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
WA [auth DF]Ribosomal_L21pe6zqdDF1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
YA [auth DH]Ribosomal_L21pe6zqdDH1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
ZA [auth DI]Ribosomal_L21pe6zqdDI1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
I [auth UI]Ribosomal_L21pe6zqdUI1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
KB [auth Dc]Ribosomal_L21pe6zqdDc1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
JB [auth DY]Ribosomal_L21pe6zqdDY1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
IB [auth DX]Ribosomal_L21pe6zqdDX1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
HB [auth DW]Ribosomal_L21pe6zqdDW1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
GB [auth DT]Ribosomal_L21pe6zqdDT1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
FB [auth DS]Ribosomal_L21pe6zqdDS1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
EB [auth DQ]Ribosomal_L21pe6zqdDQ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
DB [auth DO]Ribosomal_L21pe6zqdDO1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
CB [auth DN]Ribosomal_L21pe6zqdDN1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
BB [auth DL]Ribosomal_L21pe6zqdDL1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
AB [auth DJ]Ribosomal_L21pe6zqdDJ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
E [auth UE]Ribosomal_L21pe6zqdUE1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
XA [auth DG]Ribosomal_L21pe6zqdDG1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
VA [auth DE]Ribosomal_L21pe6zqdDE1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
TA [auth JJ]Ribosomal_L21pe6zqdJJ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
SA [auth Db]Ribosomal_L21pe6zqdDb1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
D [auth UD]Ribosomal_L21pe6zqdUD1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
PA [auth JL]Ribosomal_L21pe6zqdJL1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
OA [auth JI]Ribosomal_L21pe6zqdJI1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
LA [auth JF]Ribosomal_L21pe6zqdJF1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
MA [auth JG]Ribosomal_L21pe6zqdJG1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
IA [auth CM]Ribosomal_L21pe6zqdCM1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
EA [auth CI]FAD_binding_3, Pyr_redox_3e6zqdCI1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: FAD_binding_3, Pyr_redox_3ECOD (v294.1)
DA [auth CH]PA14e6zqdCH1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: PA14ECOD (v294.1)
BA [auth CF]Ribosomal_L21pe6zqdCF1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
CA [auth CG]Ribosomal_L21pe6zqdCG1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
W [auth UX]Ribosomal_L21pe6zqdUX1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
V [auth UV]Ribosomal_L21pe6zqdUV1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
O [auth UO]Fer4+Fer4_7e6zqdUO1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Fer4+Fer4_7ECOD (v294.1)
M [auth UM]Ribosomal_L21pe6zqdUM1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
L [auth UL]Ribosomal_L21pe6zqdUL1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)
A [auth UA]Ribosomal_L21pe6zqdUA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ribosomal_L21pECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth UG]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domain- Repeat
G [auth UG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
U [auth UU]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Domain
U [auth UU]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
X [auth CA],
Y [auth CB]		PF01269Fibrillarin (Fibrillarin)FibrillarinDomain
Z [auth CD]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
Z [auth CD]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
JA [auth CN]PF17799Rrp7 RRM-like N-terminal domain (RRM_Rrp7)Rrp7 RRM-like N-terminal domainThis domain corresponds to the N-terminal RNA-binding domain found in the Rrp7 protein. It has an RRM-like fold with a circular permutation [1]. Domain
JA [auth CN]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2]. Domain
KA [auth JD]PF04408Helicase associated domain (HA2), winged-helix (WHD_HA2)Helicase associated domain (HA2), winged-helixThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate wit ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3] and assure its correct function. This entry represents the WH domain, which connects the N- (RecA domains) and C-terminal domains (ratchet-like and OB-fold) of helicases.
Domain
KA [auth JD]PF07717Oligonucleotide/oligosaccharide-binding (OB)-fold (OB_NTP_bind)Oligonucleotide/oligosaccharide-binding (OB)-foldThis family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss: ...This family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss:Q84VZ2. The structure PDB:3i4u adopts an OB-fold. helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins [1].
Domain
KA [auth JD]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
KA [auth JD]PF21010Helicase associated domain (HA2), ratchet-like (HA2_C)Helicase associated domain (HA2), ratchet-likeThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains c ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with the RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3]. This entry represents the ratchet-like domain, which may be important for RNA translocation [1,2].
Domain
RA [auth JP]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
RA [auth JP]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
UA [auth DA]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
YA [auth DH]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
ZA [auth DI]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
F [auth UF]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Repeat
F [auth UF]PF23240PRP39 N-terminal HAT repeat (HAT_PRP39_N)PRP39 N-terminal HAT repeat- Repeat
JB [auth DY]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
IB [auth DX]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
HB [auth DW]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
GB [auth DT]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
FB [auth DS]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
EB [auth DQ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
DB [auth DO]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
CB [auth DN]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
BB [auth DL]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
BB [auth DL]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
AB [auth DJ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
AB [auth DJ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth UE]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
XA [auth DG]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
VA [auth DE]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
VA [auth DE]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
VA [auth DE]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
VA [auth DE]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
VA [auth DE]PF00467KOW motif (KOW)KOW motif- Family
TA [auth JJ]PF17903Krr1 KH1 domain (KH_KRR1_1st)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1]. Domain
TA [auth JJ]PF22891Eukaryotic type KH-domain (KH-domain type I) (KH_PNO1_2nd)Eukaryotic type KH-domain (KH-domain type I)This entry represents the second KH domain found in the PNO1 protein. PNO1 is part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. Domain
D [auth UD]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
OA [auth JI]PF23240PRP39 N-terminal HAT repeat (HAT_PRP39_N)PRP39 N-terminal HAT repeat- Repeat
LA [auth JF],
MA [auth JG]		PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
IA [auth CM]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
IA [auth CM]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
HA [auth CL]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
HA [auth CL]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
FA [auth CJ]PF04427Brix domain (Brix)Brix domainDomain
EA [auth CI]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
EA [auth CI]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
DA [auth CH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
BA [auth CF],
CA [auth CG]		PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
AA [auth CE]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
AA [auth CE]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
W [auth UX]PF04900Fcf1 (Fcf1)Fcf1Fcf1 is a nucleolar protein involved in pre-rRNA processing [1]. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits [1]. Domain
V [auth UV]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
V [auth UV]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
V [auth UV]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
V [auth UV]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
V [auth UV]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
V [auth UV]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
T [auth UT]PF20416U3 small nucleolar RNA-associated protein 20 domain (UTP20)U3 small nucleolar RNA-associated protein 20 domain- Repeat
T [auth UT]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminal- Repeat
B [auth UB]PF04147Nop14-like family (Nop14)Nop14-like family- Family
S [auth US]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
R [auth UR]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Q [auth UQ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
O [auth UO]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
O [auth UO]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
M [auth UM]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
M [auth UM]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
L [auth UL]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
L [auth UL]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
K [auth UK]PF03998Utp11 protein (Utp11)Utp11 protein- Family
J [auth UJ]PF08146BP28CT (NUC211) domain (BP28CT)BP28CT (NUC211) domainThis C terminal domain is found in BAP28-like nucleolar proteins [1]. Domain
J [auth UJ]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
A [auth UA]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
A [auth UA]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth UG]U3 small nucleolar RNA-associated protein 7-
P [auth UP]Bud site selection protein 21
U [auth UU]U3 small nucleolar RNA-associated protein 21-
X [auth CA],
Y [auth CB]		rRNA 2'-O-methyltransferase fibrillarin
Z [auth CD]Nucleolar protein 56
JA [auth CN]Ribosomal RNA-processing protein 7
KA [auth JD]Probable ATP-dependent RNA helicase DHR1
NA [auth JH]Essential nuclear protein 1
QA [auth JM]rRNA-processing protein FCF2-
RA [auth JP]Protein SOF1
UA [auth DA]40S ribosomal protein S1-A
WA [auth DF]Rps5p
YA [auth DH]40S ribosomal protein S7-A
ZA [auth DI]40S ribosomal protein S8-A
LB [auth D2]5ETS RNA---
I [auth UI]U3 small nucleolar RNA-associated protein 9
H [auth UH]U3 small nucleolar RNA-associated protein 8
NB [auth D4]U3 snoRNA---
MB [auth D3]18S rRNA---
KB [auth Dc]40S ribosomal protein S28-A
F [auth UF]U3 small nucleolar RNA-associated protein 6
JB [auth DY]40S ribosomal protein S24-A
IB [auth DX]40S ribosomal protein S23-A
HB [auth DW]40S ribosomal protein S22-A
GB [auth DT]40S ribosomal protein S19-A
FB [auth DS]40S ribosomal protein S18-A
EB [auth DQ]40S ribosomal protein S16-A
DB [auth DO]40S ribosomal protein S14-A
CB [auth DN]40S ribosomal protein S13
BB [auth DL]40S ribosomal protein S11-A
AB [auth DJ]40S ribosomal protein S9-A
E [auth UE]U3 small nucleolar RNA-associated protein 5-
XA [auth DG]40S ribosomal protein S6-A
VA [auth DE]40S ribosomal protein S4-A
TA [auth JJ]Pre-rRNA-processing protein PNO1
SA [auth Db]40S ribosomal protein S27-A
D [auth UD]U3 small nucleolar RNA-associated protein 4-
PA [auth JL]Dimethyladenosine transferase
OA [auth JI]rRNA biogenesis protein RRP5
LA [auth JF],
MA [auth JG]		Ribosomal RNA small subunit methyltransferase NEP1
IA [auth CM]RNA 3'-terminal phosphate cyclase-like protein
HA [auth CL]Ribosome biogenesis protein BMS1
GA [auth CK]U3 small nucleolar RNA-associated protein MPP10
FA [auth CJ]U3 small nucleolar ribonucleoprotein protein IMP4
C [auth UC]Something about silencing protein 10
EA [auth CI]U3 small nucleolar ribonucleoprotein protein IMP3
DA [auth CH]Ribosomal RNA-processing protein 9
BA [auth CF],
CA [auth CG]		13 kDa ribonucleoprotein-associated protein
AA [auth CE]Nucleolar protein 58
W [auth UX]rRNA-processing protein FCF1
V [auth UV]U3 small nucleolar RNA-associated protein 22
T [auth UT]U3 small nucleolar RNA-associated protein 20
B [auth UB]Nucleolar complex protein 14
S [auth US]Nucleolar complex protein 4-
R [auth UR]U3 small nucleolar RNA-associated protein 18-
Q [auth UQ]NET1-associated nuclear protein 1
O [auth UO]U3 small nucleolar RNA-associated protein 15
N [auth UN]U3 small nucleolar RNA-associated protein 14
M [auth UM]U3 small nucleolar RNA-associated protein 13
L [auth UL]U3 small nucleolar RNA-associated protein 12
K [auth UK]U3 small nucleolar RNA-associated protein 11-
J [auth UJ]U3 small nucleolar RNA-associated protein 10
A [auth UA]Periodic tryptophan protein 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth UG]IPR019775WD40 repeat, conserved siteConserved Site
G [auth UG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
G [auth UG]IPR012952BING4, C-terminal domainDomain
G [auth UG]IPR001680WD40 repeatRepeat
G [auth UG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
G [auth UG]IPR040315WD repeat-containing protein WDR46/Utp7Family
P [auth UP]IPR013268U3 small nucleolar RNA-associated protein 16Family
U [auth UU]IPR019775WD40 repeat, conserved siteConserved Site
U [auth UU]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
U [auth UU]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
U [auth UU]IPR001680WD40 repeatRepeat
U [auth UU]IPR007319WDR36/Utp21, C-terminal domainDomain
U [auth UU]IPR059157WDR36/Utp21, N-terminal domainDomain
U [auth UU]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
X [auth CA],
Y [auth CB]		IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
X [auth CA],
Y [auth CB]		IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
X [auth CA],
Y [auth CB]		IPR020813Fibrillarin, conserved siteConserved Site
Z [auth CD]IPR042239Nop, C-terminal domainHomologous Superfamily
Z [auth CD]IPR012974Nucleolar protein 58/56, N-terminalDomain
Z [auth CD]IPR002687Nop domainDomain
Z [auth CD]IPR012976NOSICDomain
Z [auth CD]IPR036070Nop domain superfamilyHomologous Superfamily
Z [auth CD]IPR045056Nucleolar protein Nop56/Nop58Family
JA [auth CN]IPR040446Ribosomal RNA-processing protein 7Family
JA [auth CN]IPR040447Rrp7, RRM-like N-terminal domainDomain
JA [auth CN]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
KA [auth JD]IPR011709DEAD-box helicase, OB foldDomain
KA [auth JD]IPR001650Helicase, C-terminal domain-likeDomain
KA [auth JD]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
KA [auth JD]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
KA [auth JD]IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
KA [auth JD]IPR007502Helicase-associated domainDomain
KA [auth JD]IPR011545DEAD/DEAH-box helicase domainDomain
KA [auth JD]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NA [auth JH]IPR007955BystinFamily
QA [auth JM]IPR039883Fcf2/DNTTIP2Family
QA [auth JM]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
RA [auth JP]IPR051733WD repeat-containing DCAF13/WDSOF1Family
RA [auth JP]IPR007287Sof1-like proteinDomain
RA [auth JP]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
RA [auth JP]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
RA [auth JP]IPR001680WD40 repeatRepeat
RA [auth JP]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
UA [auth DA]IPR001593Small ribosomal subunit protein eS1Family
UA [auth DA]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
UA [auth DA]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
WA [auth DF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
WA [auth DF]IPR000235Small ribosomal subunit protein uS7Family
WA [auth DF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
WA [auth DF]IPR023798Small ribosomal subunit protein uS7 domainDomain
WA [auth DF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
YA [auth DH]IPR000554Small ribosomal subunit protein eS7Family
YA [auth DH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
ZA [auth DI]IPR001047Small ribosomal subunit protein eS8Family
ZA [auth DI]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
ZA [auth DI]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
ZA [auth DI]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
I [auth UI]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
H [auth UH]IPR053881Utp8, C-terminalDomain
H [auth UH]IPR018843Utp8, beta-propellerDomain
KB [auth Dc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
KB [auth Dc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
KB [auth Dc]IPR000289Small ribosomal subunit protein eS28Family
F [auth UF]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
F [auth UF]IPR055347U3 small nucleolar RNA-associated protein 6, N-terminalDomain
F [auth UF]IPR003107HAT (Half-A-TPR) repeatRepeat
F [auth UF]IPR013949U3 small nucleolar RNA-associated protein 6Family
JB [auth DY]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
JB [auth DY]IPR001976Small ribosomal subunit protein eS24Family
JB [auth DY]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
JB [auth DY]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
IB [auth DX]IPR006032Small ribosomal subunit protein uS12Family
IB [auth DX]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IB [auth DX]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
HB [auth DW]IPR000630Small ribosomal subunit protein uS8Family
HB [auth DW]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
HB [auth DW]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
GB [auth DT]IPR001266Small ribosomal subunit protein eS19Family
GB [auth DT]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
GB [auth DT]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
GB [auth DT]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
FB [auth DS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
FB [auth DS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
FB [auth DS]IPR001892Small ribosomal subunit protein uS13Family
FB [auth DS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
EB [auth DQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
EB [auth DQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
EB [auth DQ]IPR000754Small ribosomal subunit protein uS9Family
EB [auth DQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
DB [auth DO]IPR001971Small ribosomal subunit protein uS11Family
DB [auth DO]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
DB [auth DO]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
CB [auth DN]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
CB [auth DN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
CB [auth DN]IPR000589Small ribosomal subunit protein uS15Family
CB [auth DN]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
BB [auth DL]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
BB [auth DL]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
BB [auth DL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BB [auth DL]IPR000266Small ribosomal subunit protein uS17Family
BB [auth DL]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
AB [auth DJ]IPR002942RNA-binding S4 domainDomain
AB [auth DJ]IPR022801Small ribosomal subunit protein uS4Family
AB [auth DJ]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
AB [auth DJ]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
AB [auth DJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
AB [auth DJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth UE]IPR052414U3 small nucleolar RNA-associated WD repeat-containing proteinFamily
E [auth UE]IPR007148Small-subunit processome, Utp12Domain
E [auth UE]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth UE]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
XA [auth DG]IPR014401Small ribosomal subunit protein eS6-likeFamily
XA [auth DG]IPR001377Small ribosomal subunit protein eS6Family
XA [auth DG]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
VA [auth DE]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
VA [auth DE]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
VA [auth DE]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
VA [auth DE]IPR002942RNA-binding S4 domainDomain
VA [auth DE]IPR013845Small ribosomal subunit protein eS4, central regionDomain
VA [auth DE]IPR000876Small ribosomal subunit protein eS4Family
VA [auth DE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
VA [auth DE]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
VA [auth DE]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
VA [auth DE]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
VA [auth DE]IPR005824KOWDomain
TA [auth JJ]IPR041174KRR1 small subunit processome component, first KH domainDomain
TA [auth JJ]IPR055212PNO1, first type I KH domainDomain
TA [auth JJ]IPR055211PNO1, second type I KH domainDomain
TA [auth JJ]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
SA [auth Db]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
SA [auth Db]IPR000592Small ribosomal subunit protein eS27Family
SA [auth Db]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
D [auth UD]IPR046351U3 small nucleolar RNA-associated protein 4Family
D [auth UD]IPR001680WD40 repeatRepeat
D [auth UD]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D [auth UD]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
PA [auth JL]IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmFamily
PA [auth JL]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
PA [auth JL]IPR020598Ribosomal RNA adenine methylase transferase, N-terminalDomain
PA [auth JL]IPR011530Ribosomal RNA adenine dimethylaseFamily
PA [auth JL]IPR020596Ribosomal RNA adenine methylase transferase, conserved siteConserved Site
OA [auth JI]IPR048059rRNA biogenesis protein RRP5, S1 domain, first repeatDomain
OA [auth JI]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
OA [auth JI]IPR003029S1 domainDomain
OA [auth JI]IPR048058rRNA biogenesis protein RRP5, S1 domain, eleventh repeatDomain
OA [auth JI]IPR003107HAT (Half-A-TPR) repeatRepeat
OA [auth JI]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
OA [auth JI]IPR045209rRNA biogenesis protein Rrp5Family
LA [auth JF],
MA [auth JG]		IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
LA [auth JF],
MA [auth JG]		IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
LA [auth JF],
MA [auth JG]		IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
IA [auth CM]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
IA [auth CM]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
IA [auth CM]IPR000228RNA 3'-terminal phosphate cyclaseFamily
IA [auth CM]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
IA [auth CM]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
IA [auth CM]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
IA [auth CM]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
IA [auth CM]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
HA [auth CL]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
HA [auth CL]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
HA [auth CL]IPR003959ATPase, AAA-type, coreDomain
HA [auth CL]IPR012948AARP2CNDomain
HA [auth CL]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
HA [auth CL]IPR030387Bms1/Tsr1-type G domainDomain
HA [auth CL]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
GA [auth CK]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
FA [auth CJ]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
FA [auth CJ]IPR007109Brix domainDomain
C [auth UC]IPR018972Sas10 C-terminal domainDomain
C [auth UC]IPR007146Sas10/Utp3/C1DFamily
EA [auth CI]IPR002942RNA-binding S4 domainDomain
EA [auth CI]IPR022801Small ribosomal subunit protein uS4Family
EA [auth CI]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
EA [auth CI]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
DA [auth CH]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth CH]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
DA [auth CH]IPR001680WD40 repeatRepeat
DA [auth CH]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BA [auth CF],
CA [auth CG]		IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
BA [auth CF],
CA [auth CG]		IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
BA [auth CF],
CA [auth CG]		IPR018492Ribosomal protein eL8/Nhp2 familyFamily
BA [auth CF],
CA [auth CG]		IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
BA [auth CF],
CA [auth CG]		IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
BA [auth CF],
CA [auth CG]		IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
AA [auth CE]IPR042239Nop, C-terminal domainHomologous Superfamily
AA [auth CE]IPR012974Nucleolar protein 58/56, N-terminalDomain
AA [auth CE]IPR002687Nop domainDomain
AA [auth CE]IPR012976NOSICDomain
AA [auth CE]IPR036070Nop domain superfamilyHomologous Superfamily
AA [auth CE]IPR045056Nucleolar protein Nop56/Nop58Family
W [auth UX]IPR002716PIN domainDomain
W [auth UX]IPR006984Fcf1/UTP23Family
W [auth UX]IPR029060PIN-like domain superfamilyHomologous Superfamily
W [auth UX]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
V [auth UV]IPR035367Nrap protein, domain 2Domain
V [auth UV]IPR035368Nrap protein, domain 3Domain
V [auth UV]IPR035370Nrap protein, domain 5Domain
V [auth UV]IPR005554NOL6/Upt22Family
V [auth UV]IPR035369Nrap protein, domain 4Domain
V [auth UV]IPR035082Nrap protein domain 1Domain
V [auth UV]IPR035371Nrap protein, domain 6Domain
T [auth UT]IPR046523U3 small nucleolar RNA-associated protein 20 domainDomain
T [auth UT]IPR016024Armadillo-type foldHomologous Superfamily
T [auth UT]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
T [auth UT]IPR011989Armadillo-like helicalHomologous Superfamily
T [auth UT]IPR057525U3 small nucleolar RNA-associated protein 20, C-terminalDomain
T [auth UT]IPR052575Small subunit processome component 20Family
B [auth UB]IPR007276Nucleolar protein 14Family
S [auth US]IPR005612CCAAT-binding factorDomain
S [auth US]IPR027193Nucleolar complex protein 4-likeFamily
R [auth UR]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
R [auth UR]IPR001680WD40 repeatRepeat
R [auth UR]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
R [auth UR]IPR045161U3 small nucleolar RNA-associated protein 18Family
Q [auth UQ]IPR053826WD repeat-containing protein 75Family
Q [auth UQ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Q [auth UQ]IPR001680WD40 repeatRepeat
Q [auth UQ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
O [auth UO]IPR019775WD40 repeat, conserved siteConserved Site
O [auth UO]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
O [auth UO]IPR001680WD40 repeatRepeat
O [auth UO]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
O [auth UO]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
N [auth UN]IPR006709Small-subunit processome, Utp14Family
M [auth UM]IPR019775WD40 repeat, conserved siteConserved Site
M [auth UM]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
M [auth UM]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
M [auth UM]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
M [auth UM]IPR001680WD40 repeatRepeat
M [auth UM]IPR057644WD repeat-containing protein 75, second beta-propellerDomain
M [auth UM]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
L [auth UL]IPR019775WD40 repeat, conserved siteConserved Site
L [auth UL]IPR007148Small-subunit processome, Utp12Domain
L [auth UL]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth UL]IPR051570TBC1 domain family involved in cilium biogenesisFamily
L [auth UL]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
L [auth UL]IPR001680WD40 repeatRepeat
L [auth UL]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
K [auth UK]IPR007144Small-subunit processome, Utp11Family
J [auth UJ]IPR016024Armadillo-type foldHomologous Superfamily
J [auth UJ]IPR040191U3 small nucleolar RNA-associated protein 10Family
J [auth UJ]IPR021133HEAT, type 2Repeat
J [auth UJ]IPR056473Utp10/HEAT1, HEAT-repeats domainDomain
J [auth UJ]IPR011989Armadillo-like helicalHomologous Superfamily
J [auth UJ]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
J [auth UJ]IPR012954BP28, C-terminal domainDomain
A [auth UA]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
A [auth UA]IPR019775WD40 repeat, conserved siteConserved Site
A [auth UA]IPR007148Small-subunit processome, Utp12Domain
A [auth UA]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A [auth UA]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
A [auth UA]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
A [auth UA]IPR001680WD40 repeatRepeat
A [auth UA]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth UA]IPR027145Periodic tryptophan protein 2Family