Annotations: 6ZO4

The pointed end complex of dynactin bound to BICD2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth V]	Ldh_1_C	e6zo4V1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
H [auth U]	Ldh_1_C	e6zo4U1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
F [auth J]	Ldh_1_C	e6zo4J1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
D [auth H]	Ldh_1_C	e6zo4H1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
E [auth I]	Ldh_1_C	e6zo4I1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
C [auth G]	Ldh_1_C	e6zo4G1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
J [auth Y]	PF05502	Dynactin p62 family (Dynactin_p62)	Dynactin p62 family	-	Family
I [auth V]	PF21711	Dynactin subunit 5 (DCTN5)	Dynactin subunit 5	-	Repeat
G [auth M]	PF04912	Dynamitin (Dynamitin)	Dynamitin	-	Family
C [auth G], E [auth I]	PF00022	Actin (Actin)	Actin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J [auth Y]	Dynactin subunit 4	-	-	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton sarcomere contractile muscle fiber protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton sarcomere contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex cell periphery cell cortex centrosome microtubule organizing center actin filament bundle actomyosin stress fiber contractile actin filament bundle
I [auth V]	Dynactin subunit 5	-	developmental process heart development multicellular organismal process animal organ development ventricular septum development circulatory system development multicellular organism development cardiac septum development cardiac chamber development anatomical structure development cardiac ventricle development system development coronary vasculature development vasculature development developmental process heart development multicellular organismal process animal organ development ventricular septum development circulatory system development multicellular organism development cardiac septum development cardiac chamber development anatomical structure development cardiac ventricle development system development coronary vasculature development vasculature development blood vessel development artery development aorta development	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton chromosome chromosomal region protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome membrane-bounded organelle nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system organelle envelope nuclear envelope organelle membrane membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen centrosome microtubule organizing center
H [auth U]	Dynactin 6	protein-containing complex binding binding dynein complex binding	microtubule cytoskeleton organization mitotic cell cycle mitotic spindle organization cellular component organization organelle organization mitotic cell cycle process cellular process microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton chromosome chromosomal region protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome centrosome microtubule organizing center
G [auth M]	Dynactin subunit 2	-	microtubule cytoskeleton organization mitotic cell cycle mitotic spindle organization cellular component organization organelle organization mitotic cell cycle process cellular process microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton membrane cytoplasm protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton membrane cytoplasm catalytic complex dynein complex centrosome microtubule organizing center polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
F [auth J]	Arp11	-	establishment of organelle localization cellular localization organelle transport along microtubule transport localization mitochondrion localization mitochondrion transport along microtubule organelle localization establishment of localization in cell transport along microtubule axonal transport of mitochondrion establishment of mitochondrion localization retrograde axonal transport intracellular transport establishment of organelle localization cellular localization organelle transport along microtubule transport localization mitochondrion localization mitochondrion transport along microtubule organelle localization establishment of localization in cell transport along microtubule axonal transport of mitochondrion establishment of mitochondrion localization retrograde axonal transport intracellular transport axonal transport establishment of localization establishment of mitochondrion localization, microtubule-mediated axo-dendritic transport microtubule-based transport cytoskeleton-dependent intracellular transport cellular process microtubule-based movement microtubule-based process retrograde axonal transport of mitochondrion	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton neuron projection cytoplasm axon protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton neuron projection cytoplasm axon cell projection axon cytoplasm neuron projection cytoplasm plasma membrane bounded cell projection
D [auth H]	Actin, cytoplasmic 1	structural constituent of postsynapse structural constituent of cytoskeleton structural molecule activity structural constituent of synapse structural constituent of postsynaptic actin cytoskeleton binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding structural constituent of postsynapse structural constituent of cytoskeleton structural molecule activity structural constituent of synapse structural constituent of postsynaptic actin cytoskeleton binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding enzyme regulator activity molecular function regulator activity nitric-oxide synthase regulator activity nitric-oxide synthase binding protein binding enzyme binding identical protein binding cytoskeletal protein binding kinesin binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding Tat protein binding kinase binding protein kinase binding transporter regulator activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	cellular response to nitrogen compound cellular response to stimulus response to cytochalasin B response to stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to cytochalasin B cellular response to chemical stimulus response to chemical cellular process regulation of localization import into cell cellular localization cellular response to nitrogen compound cellular response to stimulus response to cytochalasin B response to stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to cytochalasin B cellular response to chemical stimulus response to chemical cellular process regulation of localization import into cell cellular localization regulation of cellular process regulation of cellular component organization transport synaptic vesicle cycle regulation of synaptic vesicle recycling vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse cellular component organization localization synaptic vesicle recycling regulation of synaptic vesicle endocytosis establishment of localization in cell cellular component organization or biogenesis regulation of endocytosis synaptic vesicle endocytosis regulation of biological process regulation of transport biological regulation regulation of vesicle-mediated transport establishment of localization endocytosis multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development tissue morphogenesis epithelium development morphogenesis of a polarized epithelium morphogenesis of an epithelium tissue development regulation of DNA recombination regulation of double-strand break repair regulation of cellular response to stress positive regulation of biological process positive regulation of double-strand break repair via homologous recombination regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of response to stimulus positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress recombinational repair positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process double-strand break repair via homologous recombination positive regulation of cellular process DNA repair positive regulation of DNA recombination double-strand break repair DNA recombination primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process positive regulation of double-strand break repair regulation of DNA repair regulation of double-strand break repair via homologous recombination positive regulation of DNA metabolic process DNA damage response regulation of response to stimulus metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process monoamine transport norepinephrine transport nitrogen compound transport organic hydroxy compound transport organic cation transport catecholamine uptake catecholamine transport regulation of norepinephrine uptake norepinephrine uptake establishment or maintenance of cell polarity protein localization to cell periphery regulation of protein localization protein localization to plasma membrane regulation of protein localization to cell periphery localization within membrane protein localization to membrane regulation of cellular localization macromolecule localization intracellular protein localization regulation of protein localization to plasma membrane regulation of protein localization to membrane cell motility adherens junction organization adherens junction assembly cellular component biogenesis cell junction organization cellular component assembly cell junction assembly cell-cell junction assembly cell-cell junction organization transepithelial transport regulation of transepithelial transport apical protein localization protein localization to cell junction protein localization to adherens junction protein localization to cell-cell junction cell cycle regulation of cell cycle	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol apical part of cell cluster of actin-based cell projections brush border synapse cell junction glutamatergic synapse apical junction complex cell-cell junction anchoring junction adherens junction axon neuron projection axon terminus presynapse distal axon calyx of Held neuron projection terminus polymeric cytoskeletal fiber actin filament supramolecular fiber supramolecular polymer supramolecular complex cell cortex cortical cytoskeleton cell periphery focal adhesion cell-substrate junction postsynapse postsynaptic cytoskeleton postsynaptic actin cytoskeleton protein-containing complex catalytic complex NuA4 histone acetyltransferase complex chromatin chromosome transferase complex H4/H2A histone acetyltransferase complex histone acetyltransferase complex acetyltransferase complex H4 histone acetyltransferase complex protein acetyltransferase complex intracellular protein-containing complex dense body plasma membrane protein-DNA complex nucleosome cytoplasmic ribonucleoprotein granule ribonucleoprotein granule Schaffer collateral - CA1 synapse tight junction ribonucleoprotein complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C [auth G], E [auth I]	ARP1 actin related protein 1 homolog A	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	-	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton cell periphery cell cortex protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton dynactin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton cell periphery cell cortex cytoplasm centrosome microtubule organizing center
A [auth 5], B [auth 6]	BICD2	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
J [auth Y]	IPR008603	Dynactin subunit 4	Family
I [auth V]	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
I [auth V]	IPR047125	Dynactin subunit 5	Family
H [auth U]	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
H [auth U]	IPR027777	Dynactin subunit 6	Family
G [auth M]	IPR028133	Dynamitin	Family
F [auth J]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
F [auth J]	IPR004000	Actin family	Family
D [auth H]	IPR020902	Actin/actin-like conserved site	Conserved Site
D [auth H]	IPR004001	Actin, conserved site	Conserved Site
D [auth H]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
D [auth H]	IPR004000	Actin family	Family
C [auth G], E [auth I]	IPR020902	Actin/actin-like conserved site	Conserved Site
C [auth G], E [auth I]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
C [auth G], E [auth I]	IPR004000	Actin family	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6ZO4 | pdb_00006zo4

The pointed end complex of dynactin bound to BICD2

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage