6ZJ3 | pdb_00006zj3

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
PB [auth Lc]SCOP2 FamilyRibosomal protein L10e 8099389 4001135 SCOP2 (2022-06-29)
PB [auth Lc]SCOP2 SuperfamilyRibosomal protein L16p/L10e 8099390 3000884 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
RC [auth L4]e6zj3L41 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
QC [auth L5]e6zj3L51 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
PC [auth L3]e6zj3L31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
OC [auth L2]e6zj3L21 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
NC [auth L1]e6zj3L11 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
MC [auth Lz]e6zj3Lz1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
LC [auth Ly]e6zj3Ly1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: FAD_binding_3, Pyr_redox_3F:ECOD (20:10:01)
I [auth SD]e6zj3SD1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
KC [auth Lx]e6zj3Lx1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: FAD_binding_3, Pyr_redox_3F:ECOD (20:10:01)
JC [auth Lw]e6zj3Lw1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
IC [auth Lv]e6zj3Lv1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
HC [auth Lu]e6zj3Lu1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
GC [auth Lt]e6zj3Lt1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
FC [auth Ls]e6zj3Ls1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
EC [auth Lr]e6zj3Lr1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
DC [auth Lq]e6zj3Lq01 A: Rossmann-likeX: Rossmann-relatedH: FAD/NAD(P)-binding domainT: Ribosomal_L16F:ECOD (20:10:01)
CC [auth Lp]e6zj3Lp1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
H [auth SC]e6zj3SC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
AC [auth Ln]e6zj3Ln1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
ZB [auth Lm]e6zj3Lm1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
YB [auth Ll]e6zj3Ll1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
XB [auth Lk]e6zj3Lk1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
WB [auth Lj]e6zj3Lj1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
VB [auth Li]e6zj3Li1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
UB [auth Lh]e6zj3Lh01 A: Rossmann-likeX: Rossmann-relatedH: FAD/NAD(P)-binding domainT: Ribosomal_L16F:ECOD (20:10:01)
TB [auth Lg]e6zj3Lg1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: PDZ_2F:ECOD (20:10:01)
SB [auth Lf]e6zj3Lf1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
RB [auth Le]e6zj3Le1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
G [auth SB]e6zj3SB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
QB [auth Ld]e6zj3Ld1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
PB [auth Lc]e6zj3Lc1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
OB [auth Lb]e6zj3Lb1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
NB [auth La]e6zj3La1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
MB [auth LZ]e6zj3LZ01 A: Rossmann-likeX: Rossmann-relatedH: FAD/NAD(P)-binding domainT: Ribosomal_L16F:ECOD (20:10:01)
LB [auth LY]e6zj3LY1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
KB [auth LX]e6zj3LX1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
JB [auth LW]e6zj3LW1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
IB [auth LV]e6zj3LV1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
HB [auth LU]e6zj3LU1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
F [auth SA]e6zj3SA1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
GB [auth LT]e6zj3LT1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
FB [auth LS]e6zj3LS1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
EB [auth LR]e6zj3LR01 A: Rossmann-likeX: Rossmann-relatedH: FAD/NAD(P)-binding domainT: Ribosomal_L16F:ECOD (20:10:01)
DB [auth LQ]e6zj3LQ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
CB [auth LP]e6zj3LP1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
MA [auth Sh]e6zj3Sh1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
KA [auth Sf]e6zj3Sf1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
JA [auth Se]e6zj3Se1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
IA [auth Sd]e6zj3Sd1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
HA [auth Sc]e6zj3Sc1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
GA [auth Sb]e6zj3Sb1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
FA [auth Sa]e6zj3Sa1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
EA [auth SZ]e6zj3SZ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
DA [auth SY]e6zj3SY1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
CA [auth SX]e6zj3SX1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
BA [auth SW]e6zj3SW1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
AA [auth SV]e6zj3SV1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
Z [auth SU]e6zj3SU1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
Y [auth ST]e6zj3ST1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
X [auth SS]e6zj3SS1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
W [auth SR]e6zj3SR1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
V [auth SQ]e6zj3SQ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
U [auth SP]e6zj3SP1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
T [auth SO]e6zj3SO1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
S [auth SN]e6zj3SN1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
R [auth SM]e6zj3SM1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
Q [auth SL]e6zj3SL1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
P [auth SK]e6zj3SK1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
O [auth SJ]e6zj3SJ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
N [auth SI]e6zj3SI1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
M [auth SH]e6zj3SH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
L [auth SG]e6zj3SG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
K [auth SF]e6zj3SF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)
J [auth SE]e6zj3SE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: VWDF:ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
TC [auth L7]Ribosomal protein eLEgr3---
SC [auth L6]Ribosomal protein eLEgr2---
RC [auth L4]Ribosomal protein eL43---
QC [auth L5]Ribosomal protein eL42---
PC [auth L3]Ribosomal protein eL41---
OC [auth L2]Ribosomal protein eL40---
NC [auth L1]Ribosomal protein eL39---
MC [auth Lz]Ribosomal protein eL38---
LC [auth Ly]Ribosomal protein eL37---
I [auth SD]Ribosomal protein uS4---
KC [auth Lx]Ribosomal protein eL36---
JC [auth Lw]Ribosomal protein eL34---
IC [auth Lv]Ribosomal protein eL33---
HC [auth Lu]Ribosomal protein eL32---
GC [auth Lt]Ribosomal protein eL31---
FC [auth Ls]Ribosomal protein eL30---
EC [auth Lr]Ribosomal protein uL30---
DC [auth Lq]Ribosomal protein eL29---
CC [auth Lp]Ribosomal protein uL29---
BC [auth Lo]Ribosomal protein eLEgr1---
H [auth SC]Ribosomal protein uS3---
AC [auth Ln]Ribosomal protein eL27---
ZB [auth Lm]Ribosomal protein eL24---
YB [auth Ll]Ribosomal protein uL24---
XB [auth Lk]Ribosomal protein uL23---
WB [auth Lj]Ribosomal protein eL22---
VB [auth Li]Ribosomal protein uL22---
UB [auth Lh]Ribosomal protein eL21---
TB [auth Lg]Ribosomal protein eL20---
SB [auth Lf]Ribosomal protein eL19---
RB [auth Le]Ribosomal protein eL18---
G [auth SB]Ribosomal protein uS2---
QB [auth Ld]Ribosomal protein uL18---
PB [auth Lc]60S ribosomal protein L10
OB [auth Lb]Ribosomal protein eL15---
NB [auth La]Ribosomal protein uL15---
MB [auth LZ]Ribosomal protein eL14---
LB [auth LY]Ribosomal protein uL14---
KB [auth LX]Ribosomal protein eL13---
JB [auth LW]Ribosomal protein uL13---
IB [auth LV]60S ribosomal protein L7a -
HB [auth LU]Ribosomal protein eL6---
F [auth SA]Ribosomal protein eS1---
GB [auth LT]Ribosomal protein uL6---
FB [auth LS]Ribosomal protein uL5---
EB [auth LR]Ribosomal protein uL4---
DB [auth LQ]Ribosomal protein uL3---
CB [auth LP]Ribosomal protein uL2---
BB [auth LO]5S rRNA---
AB [auth LN]LSU rRNA chain 13---
ZA [auth LM]LSU rRNA chain 12---
YA [auth LL]LSU rRNA chain 11---
XA [auth LK]LSU rRNA chain 10---
E [auth S5]A-site tRNA---
WA [auth LJ]LSU rRNA chain 9---
VA [auth LI]LSU rRNA chain 8---
UA [auth LH]LSU rRNA chain 7---
TA [auth LG]LSU rRNA chain 6---
SA [auth LF]LSU rRNA chain 5---
RA [auth LE]LSU rRNA chain 4---
QA [auth LD]LSU rRNA chain 3---
PA [auth LC]LSU rRNA chain 2---
OA [auth LB]LSU rRNA chain 1---
NA [auth LA]5.8S rRNA---
D [auth S4]E-tRNA---
MA [auth Sh]RACK1---
LA [auth Sg]Ribosomal protein eSEug1---
KA [auth Sf]Ribosomal protein eS31---
JA [auth Se]Ribosomal protein eS30---
IA [auth Sd]Ribosomal protein eS28---
HA [auth Sc]Ribosomal protein eS27---
GA [auth Sb]Ribosomal protein eS26---
FA [auth Sa]Ribosomal protein eS25---
EA [auth SZ]Ribosomal protein eS24---
DA [auth SY]Ribosomal protein eS21---
C [auth S3]P-tRNA---
CA [auth SX]Ribosomal protein eS19---
BA [auth SW]Ribosomal protein uS19---
AA [auth SV]Ribosomal protein eS17---
Z [auth SU]Ribosomal protein uS17---
Y [auth ST]Ribosomal protein uS15---
X [auth SS]Ribosomal protein uS14---
W [auth SR]Ribosomal protein uS13---
V [auth SQ]Ribosomal protein eS12---
U [auth SP]Ribosomal protein uS12---
T [auth SO]Ribosomal protein uS11---
B [auth S2]A-tRNA---
S [auth SN]Ribosomal protein eS10---
R [auth SM]Ribosomal protein uS10---
Q [auth SL]Ribosomal protein uS9---
P [auth SK]Ribosomal protein eS8---
O [auth SJ]Ribosomal protein uS8---
N [auth SI]Ribosomal protein eS7---
M [auth SH]Ribosomal protein uS7---
L [auth SG]Ribosomal protein eS6---
K [auth SF]Ribosomal protein uS5---
J [auth SE]Ribosomal protein eS4---
A [auth S1]18S rRNA---