6ZJ2 | pdb_00006zj2

Structure of RcsB from Salmonella enterica serovar Typhimurium bound to promoter rprA in the presence of phosphomimetic BeF3-

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth O]	Response_reg	e6zj2O1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
K [auth N]	GerE	e6zj2N1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, LuxR-like	F: GerE	ECOD (1.6)
K [auth N]	Response_reg	e6zj2N2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
J [auth M]	GerE	e6zj2M2	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, LuxR-like	F: GerE	ECOD (1.6)
J [auth M]	Response_reg	e6zj2M1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
I [auth L]	GerE	e6zj2L2	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, LuxR-like	F: GerE	ECOD (1.6)
I [auth L]	Response_reg	e6zj2L1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
D [auth C]	GerE	e6zj2C1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, LuxR-like	F: GerE	ECOD (1.6)
D [auth C]	Response_reg	e6zj2C2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
C [auth D]	GerE	e6zj2D2	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, LuxR-like	F: GerE	ECOD (1.6)
C [auth D]	Response_reg	e6zj2D1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
B [auth A]	GerE	e6zj2A2	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, LuxR-like	F: GerE	ECOD (1.6)
B [auth A]	Response_reg	e6zj2A1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)
A [auth B]	GerE	e6zj2B1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, LuxR-like	F: GerE	ECOD (1.6)
A [auth B]	Response_reg	e6zj2B2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Response_reg	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L [auth O]	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (utative)
K [auth N]	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (utative)
J [auth M]	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (utative)
I [auth L]	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (utative)
D [auth C]	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (utative)
D [auth C]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
C [auth D]	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (utative)
C [auth D]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
B [auth A]	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (utative)
B [auth A]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)
A [auth B]	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (utative)
A [auth B]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], J [auth M], K [auth N], L [auth O]	PF00072	Response regulator receiver domain (Response_reg)	Response regulator receiver domain	This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	Domain
A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], J [auth M], K [auth N], L [auth O]	PF00196	Bacterial regulatory proteins, luxR family (GerE)	Bacterial regulatory proteins, luxR family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F, H [auth I]	DNA (5'-D(PCPCPGPAPTPCPAPGPAPTPTPCPGPTPCPTPCPAPAPTPAPGP*G)-3')	-	-	-
E, G	rprA promoter sequence	-	-	-
A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], J [auth M], K [auth N], L [auth O]	Transcriptional regulatory protein RcsB	DNA binding binding nucleic acid binding	cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], J [auth M], K [auth N], L [auth O]	IPR030864	Transcriptional regulatory protein RcsB	Family
A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], J [auth M], K [auth N], L [auth O]	IPR039420	Transcriptional regulatory protein WalR-like	Family
A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], J [auth M], K [auth N], L [auth O]	IPR011006	CheY-like superfamily	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], J [auth M], K [auth N], L [auth O]	IPR001789	Signal transduction response regulator, receiver domain	Domain
A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], J [auth M], K [auth N], L [auth O]	IPR000792	Transcription regulator LuxR, C-terminal	Domain
A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], J [auth M], K [auth N], L [auth O]	IPR016032	Signal transduction response regulator, C-terminal effector	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], A [auth B], B [auth A], C [auth D], D [auth C], I [auth L], J [auth M], K [auth N], L [auth O]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.