6ZG3
the structure of ECF PanT transporter in a complex with a nanobody
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: ECOD Classification
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | d6zg3e1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
E | d6zg3e2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
J | d6zg3j1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
J | d6zg3j2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00005 | e6zg3A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00005 | ECOD (1.6) |
F | PF00005 | e6zg3F1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00005 | ECOD (1.6) |
B | PF00005 | e6zg3B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00005 | ECOD (1.6) |
G | PF00005 | e6zg3G1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00005 | ECOD (1.6) |
C | PF12822 | e6zg3C1 | A: alpha bundles | X: Spectrin repeat-like | H: S-component of energy-coupling factor (ECF) transporters (From Topology) | T: S-component of energy-coupling factor (ECF) transporters | F: PF12822 | ECOD (1.6) |
H | PF12822 | e6zg3H1 | A: alpha bundles | X: Spectrin repeat-like | H: S-component of energy-coupling factor (ECF) transporters (From Topology) | T: S-component of energy-coupling factor (ECF) transporters | F: PF12822 | ECOD (1.6) |
I | PF02361 | e6zg3I1 | A: alpha complex topology | X: T-component of energy-coupling factor (ECF) transporters (From Topology) | H: T-component of energy-coupling factor (ECF) transporters (From Topology) | T: T-component of energy-coupling factor (ECF) transporters | F: PF02361 | ECOD (1.6) |
D | PF02361 | e6zg3D1 | A: alpha complex topology | X: T-component of energy-coupling factor (ECF) transporters (From Topology) | H: T-component of energy-coupling factor (ECF) transporters (From Topology) | T: T-component of energy-coupling factor (ECF) transporters | F: PF02361 | ECOD (1.6) |
E | PF07686 | e6zg3E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J | PF07686 | e6zg3J1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | energy-coupling factor transporter atp-binding proteinecfa1 | putative cobalt abc transporter, permease protein | SAbDab (2024-05-03) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain | |
PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain | |
PF12822 | ECF transporter, substrate-specific component (ECF_trnsprt) | ECF transporter, substrate-specific component | - | Family | |
PF02361 | Cobalt transport protein (CbiQ) | Cobalt transport protein | - | Family | |