6ZCH | pdb_00006zch

Amyloid fibril morphology II (ex vivo) from murine SAA1.1 protein.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth I]	WD40	e6zchI1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
B [auth J]	WD40	e6zchJ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
C [auth H]	WD40	e6zchH1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
D [auth F]	WD40	e6zchF1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
E [auth G]	WD40	e6zchG1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
F [auth E]	WD40	e6zchE1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
H [auth D]	WD40	e6zchD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
J [auth A]	WD40	e6zchA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
K [auth L]	WD40	e6zchL1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
L [auth M]	WD40	e6zchM1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
M [auth K]	WD40	e6zchK1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
N [auth O]	WD40	e6zchO1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
O [auth P]	WD40	e6zchP1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
R [auth Q]	WD40	e6zchQ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
Q [auth R]	WD40	e6zchR1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
P [auth N]	WD40	e6zchN1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
I [auth B]	WD40	e6zchB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)
G [auth C]	WD40	e6zchC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth I], B [auth J], C [auth H], D [auth F], E [auth G], A [auth I], B [auth J], C [auth H], D [auth F], E [auth G], F [auth E], G [auth C], H [auth D], I [auth B], J [auth A], K [auth L], L [auth M], M [auth K], N [auth O], O [auth P], P [auth N], Q [auth R], R [auth Q]	PF00277	Serum amyloid A protein (SAA)	Serum amyloid A protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth I], B [auth J], C [auth H], D [auth F], E [auth G], A [auth I], B [auth J], C [auth H], D [auth F], E [auth G], F [auth E], G [auth C], H [auth D], I [auth B], J [auth A], K [auth L], L [auth M], M [auth K], N [auth O], O [auth P], P [auth N], Q [auth R], R [auth Q]	Serum amyloid A-2 protein	protein binding binding signaling receptor binding G protein-coupled receptor binding	response to stimulus response to chemical response to stilbenoid acute-phase response defense response response to stress inflammatory response acute inflammatory response	polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle cytoplasmic microtubule intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle cytoplasm supramolecular fiber microtubule supramolecular polymer supramolecular complex polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle cytoplasmic microtubule intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle cytoplasm supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton protein-containing complex extracellular region plasma lipoprotein particle high-density lipoprotein particle extracellular protein-containing complex lipoprotein particle protein-lipid complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth I], B [auth J], C [auth H], D [auth F], E [auth G], A [auth I], B [auth J], C [auth H], D [auth F], E [auth G], F [auth E], G [auth C], H [auth D], I [auth B], J [auth A], K [auth L], L [auth M], M [auth K], N [auth O], O [auth P], P [auth N], Q [auth R], R [auth Q]	IPR000096	Serum amyloid A protein	Family
A [auth I], B [auth J], C [auth H], D [auth F], E [auth G], A [auth I], B [auth J], C [auth H], D [auth F], E [auth G], F [auth E], G [auth C], H [auth D], I [auth B], J [auth A], K [auth L], L [auth M], M [auth K], N [auth O], O [auth P], P [auth N], Q [auth R], R [auth Q]	IPR052464	Synovial Proliferation Regulator	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.