6ZC5 | pdb_00006zc5

Human Adenovirus serotype D10 FiberKnob protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d6zc5l_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
K	d6zc5k_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
J	d6zc5j_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
I	d6zc5i_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
H	d6zc5h_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
G	d6zc5g_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
F	d6zc5f_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
E	d6zc5e_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
D	d6zc5d_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
C	d6zc5c_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
B	d6zc5b_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)
A	d6zc5a_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	Adenovirus fiber protein 'knob' domain	Adenovirus fiber protein 'knob' domain	(Human adenovirus D10 ) [TaxId: 28275 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Virus attachment protein globular domain	8097286	3001376	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	RNA_pol_Rpb1_5	e6zc5L1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
K	RNA_pol_Rpb1_5	e6zc5K1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
J	RNA_pol_Rpb1_5	e6zc5J1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
I	RNA_pol_Rpb1_5	e6zc5I1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
H	RNA_pol_Rpb1_5	e6zc5H1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
G	Spuma_A9PTase	e6zc5G1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Spuma_A9PTase	ECOD (develop294)
F	RNA_pol_Rpb1_5	e6zc5F1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
E	RNA_pol_Rpb1_5	e6zc5E1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
D	RNA_pol_Rpb1_5	e6zc5D1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
C	RNA_pol_Rpb1_5	e6zc5C1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
B	RNA_pol_Rpb1_5	e6zc5B1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
A	RNA_pol_Rpb1_5	e6zc5A1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Fiber	-	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction cell adhesion cellular process symbiont entry into host cell symbiont entry into host	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009013	Attachment protein shaft domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000978	Adenoviral fibre protein, knob	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008982	Adenovirus pIV-like, attachment domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000931	Adenovirus fibre protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000939	Adenoviral fibre protein, repeat/shaft region	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.