6Z48 | pdb_00006z48

Crystal structure of Thrombin in complex with macrocycle X1vE

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth B]SCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)
B [auth H]SCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth B]Trypsine6z48B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: TrypsinECOD (1.6)
F [auth D]Trypsine6z48D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: TrypsinECOD (1.6)
H [auth F]Trypsine6z48F1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: TrypsinECOD (1.6)
B [auth H]Trypsine6z48H1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: TrypsinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth B]2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (utative)
F [auth D]2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (utative)
H [auth F]2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (utative)
B [auth H]2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth H],
D [auth B],
F [auth D],
H [auth F]		PF00089Trypsin (Trypsin)TrypsinDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth H],
D [auth B],
F [auth D],
H [auth F]		Thrombin heavy chain
A [auth L],
C [auth A],
E [auth C],
G [auth E]		Thrombin light chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR018992Thrombin light chainDomain
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR003966Prothrombin/thrombinFamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR018114Serine proteases, trypsin family, histidine active siteActive Site
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR033116Serine proteases, trypsin family, serine active siteActive Site
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR001254Serine proteases, trypsin domainDomain
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR000001KringleDomain
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR051659Serine Protease S1 Domain-Containing ProteinFamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR018056Kringle, conserved siteConserved Site
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR013806Kringle-like foldHomologous Superfamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR038178Kringle superfamilyHomologous Superfamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR001314Peptidase S1A, chymotrypsin familyFamily
B [auth H],
D [auth B],
F [auth D],
H [auth F]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR018992Thrombin light chainDomain
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR003966Prothrombin/thrombinFamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR018114Serine proteases, trypsin family, histidine active siteActive Site
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR033116Serine proteases, trypsin family, serine active siteActive Site
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR001254Serine proteases, trypsin domainDomain
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR000001KringleDomain
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR051659Serine Protease S1 Domain-Containing ProteinFamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR018056Kringle, conserved siteConserved Site
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR013806Kringle-like foldHomologous Superfamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR038178Kringle superfamilyHomologous Superfamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR001314Peptidase S1A, chymotrypsin familyFamily
A [auth L],
C [auth A],
E [auth C],
G [auth E]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth H],
D [auth B],
F [auth D],
H [auth F]		Pharos:  P00734
A [auth L],
C [auth A],
E [auth C],
G [auth E]		Pharos:  P00734