6YW6
Cryo-EM structure of the ARP2/3 1B5CL isoform complex.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Actin-like ATPases | 8094241 | 3000092 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Actin-like ATPases | 8094242 | 3000092 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | WD40 repeat-like | 8094325 | 3001694 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Arp2/3 complex 21 kDa subunit ARPC3 | 8093592 | 3001830 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2 Family | Arp2/3 complex 16 kDa subunit ARPC5 | 8100453 | 4002906 | SCOP2 (2022-06-29) |
F [auth G] | SCOP2 Superfamily | Arp2/3 complex 16 kDa subunit ARPC5 | 8100454 | 3001882 | SCOP2 (2022-06-29) |
G [auth F] | SCOP2B Superfamily | Arp2/3 complex subunits | 8093618 | 3000751 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00022 | e6yw6A1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
B [auth C] | PF00400 | e6yw6C1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
C [auth D] | PF04045 | e6yw6D1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Arp2/3 complex subunits (From Topology) | T: Arp2/3 complex subunits | F: PF04045 | ECOD (1.6) |
D [auth E] | PF04062 | e6yw6E1 | A: alpha bundles | X: Arp2/3 complex 21 kDa subunit ARPC3 (From Topology) | H: Arp2/3 complex 21 kDa subunit ARPC3 (From Topology) | T: Arp2/3 complex 21 kDa subunit ARPC3 | F: PF04062 | ECOD (1.6) |
E [auth B] | F_UNCLASSIFIED | e6yw6B1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth B] | PF00022 | e6yw6B2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
F [auth G] | PF04699 | e6yw6G1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Arp2/3 complex 16 KDa subunit ARPC5 (From Topology) | T: Arp2/3 complex 16 KDa subunit ARPC5 | F: PF04699 | ECOD (1.6) |
G [auth F] | PF05856 | e6yw6F1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Arp2/3 complex subunits (From Topology) | T: Arp2/3 complex subunits | F: PF05856 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00022 | Actin (Actin) | Actin | - | Family | |
B [auth C] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
C [auth D] | PF04045 | Arp2/3 complex, 34 kD subunit p34-Arc (P34-Arc) | Arp2/3 complex, 34 kD subunit p34-Arc | - | Family |
D [auth E] | PF04062 | ARP2/3 complex ARPC3 (21 kDa) subunit (P21-Arc) | ARP2/3 complex ARPC3 (21 kDa) subunit | - | Family |
E [auth B] | PF00022 | Actin (Actin) | Actin | - | Family |
F [auth G] | PF04699 | ARP2/3 complex 16 kDa subunit (p16-Arc) (P16-Arc) | ARP2/3 complex 16 kDa subunit (p16-Arc) | The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20 ... | Domain |
G [auth F] | PF05856 | ARP2/3 complex 20 kDa subunit (ARPC4) (ARPC4) | ARP2/3 complex 20 kDa subunit (ARPC4) | - | Family |