6YVD | pdb_00006yvd

Head segment of the S.cerevisiae condensin holocomplex in presence of ATP

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	bCoV_S1_N	e6yvdB1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: bCoV_S1_N	ECOD (develop294)
B [auth A]	CSD	e6yvdA1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: CSD	ECOD (develop294)
C	CSD	e6yvdC1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: CSD	ECOD (develop294)
D	CSD	e6yvdD1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: CSD	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A]	PF12719	Nuclear condensing complex subunits, C-term domain (Cnd3)	Nuclear condensing complex subunits, C-term domain	-	Repeat
C	PF02463	RecF/RecN/SMC N terminal domain (SMC_N)	RecF/RecN/SMC N terminal domain	This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. Th ...	This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics [1]. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.	Domain
D	PF02463	RecF/RecN/SMC N terminal domain (SMC_N)	RecF/RecN/SMC N terminal domain	This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. Th ...	This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics [1]. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	Condensin complex subunit 2	chromatin binding binding	mitotic nuclear division mitotic chromosome condensation organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation cellular process mitotic nuclear division mitotic chromosome condensation organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation cellular process cell cycle cellular component organization or biogenesis chromosome segregation cell cycle process tRNA gene clustering cell division	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle protein-containing complex organelle membraneless organelle intracellular membraneless organelle chromosome condensin complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B [auth A]	Condensin complex subunit 3	chromatin binding binding	meiotic chromosome segregation meiotic chromosome separation sexual reproduction reproductive process meiotic cell cycle organelle fission meiotic cell cycle process cellular component organization nuclear division organelle organization chromosome separation nuclear chromosome segregation cellular process meiotic nuclear division meiotic chromosome segregation meiotic chromosome separation sexual reproduction reproductive process meiotic cell cycle organelle fission meiotic cell cycle process cellular component organization nuclear division organelle organization chromosome separation nuclear chromosome segregation cellular process meiotic nuclear division cell cycle cellular component organization or biogenesis chromosome segregation cell cycle process cell division synaptonemal complex assembly cellular component biogenesis cellular component assembly meiosis I synaptonemal complex organization chromosome organization chromosome organization involved in meiotic cell cycle meiosis I cell cycle process homologous chromosome pairing at meiosis homologous chromosome segregation chromosome condensation mitotic nuclear division mitotic chromosome condensation sister chromatid segregation mitotic cell cycle mitotic cell cycle process mitotic sister chromatid segregation rDNA chromatin condensation nucleolar chromatin organization nucleus organization nucleolus organization chromatin organization tRNA gene clustering meiotic chromosome condensation regulation of cellular process regulation of reproductive process negative regulation of biological process negative regulation of cell cycle regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of meiotic DNA double-strand break formation negative regulation of meiotic DNA double-strand break formation negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of cell cycle negative regulation of macromolecule metabolic process regulation of biological process regulation of cell cycle process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process DNA metabolic process negative regulation of cell cycle process nucleic acid metabolic process meiotic DNA double-strand break formation negative regulation of reproductive process metabolic process negative regulation of DNA metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome condensed chromosome cytoplasm protein-containing complex condensin complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C	Structural maintenance of chromosomes protein 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding double-stranded DNA binding nucleic acid binding DNA secondary structure binding minor groove of adenine-thymine-rich DNA binding chromatin binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	cellular process cell division cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis mitotic nuclear division mitotic chromosome condensation organelle fission sister chromatid segregation mitotic cell cycle nuclear division mitotic cell cycle process cellular process cell division cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis mitotic nuclear division mitotic chromosome condensation organelle fission sister chromatid segregation mitotic cell cycle nuclear division mitotic cell cycle process mitotic sister chromatid segregation nuclear chromosome segregation cell cycle chromosome segregation cell cycle process rDNA chromatin condensation nucleolar chromatin organization nucleus organization nucleolus organization chromatin organization tRNA gene clustering regulation of cellular process sexual reproduction regulation of reproductive process reproductive process negative regulation of biological process negative regulation of cell cycle meiotic cell cycle process regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of meiotic DNA double-strand break formation negative regulation of meiotic DNA double-strand break formation negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of cell cycle negative regulation of macromolecule metabolic process regulation of biological process regulation of cell cycle process meiotic cell cycle negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process DNA metabolic process negative regulation of cell cycle process nucleic acid metabolic process meiotic DNA double-strand break formation meiosis I cell cycle process negative regulation of reproductive process metabolic process negative regulation of DNA metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membraneless organelle intracellular membraneless organelle chromosome condensed chromosome protein-containing complex condensin complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membraneless organelle intracellular membraneless organelle chromosome condensed chromosome protein-containing complex condensin complex chromatin nucleus
D	Structural maintenance of chromosomes protein 4	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding chromatin binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	cellular process cell division cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis mitotic nuclear division mitotic chromosome condensation organelle fission sister chromatid segregation mitotic cell cycle nuclear division mitotic cell cycle process cellular process cell division cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis mitotic nuclear division mitotic chromosome condensation organelle fission sister chromatid segregation mitotic cell cycle nuclear division mitotic cell cycle process mitotic sister chromatid segregation nuclear chromosome segregation cell cycle chromosome segregation cell cycle process rDNA chromatin condensation nucleolar chromatin organization nucleus organization nucleolus organization chromatin organization tRNA gene clustering	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle protein-containing complex organelle membraneless organelle intracellular membraneless organelle chromosome condensin complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B]	IPR022816	Condensin complex subunit 2/barren	Family
B [auth A]	IPR016024	Armadillo-type fold	Homologous Superfamily
B [auth A]	IPR025977	Nuclear condensin complex subunit 3, C-terminal domain	Domain
B [auth A]	IPR027165	Condensin complex subunit 3	Family
B [auth A]	IPR011989	Armadillo-like helical	Homologous Superfamily
C	IPR010935	SMCs flexible hinge	Domain
C	IPR036277	SMCs flexible hinge superfamily	Homologous Superfamily
C	IPR027120	Smc2, ATP-binding cassette domain	Domain
C	IPR003395	RecF/RecN/SMC, N-terminal	Domain
C	IPR024704	Structural maintenance of chromosomes protein	Family
C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
D	IPR010935	SMCs flexible hinge	Domain
D	IPR036277	SMCs flexible hinge superfamily	Homologous Superfamily
D	IPR003395	RecF/RecN/SMC, N-terminal	Domain
D	IPR024704	Structural maintenance of chromosomes protein	Family
D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.