6YPU | pdb_00006ypu

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth p]	SCOP2 Family	30S Ribosomal protein S15 / 40S Ribosomal protein S13	8097477	4000767	SCOP2 (2022-06-29)
J [auth p]	SCOP2 Superfamily	S15/NS1 RNA-binding domain	8097478	3001284	SCOP2 (2022-06-29)
I [auth m]	SCOP2B Superfamily	Nucleic acid-binding proteins	8097464	3000135	SCOP2B (2022-06-29)
H [auth l]	SCOP2 Family	Ribosomal protein L18p and S11	8097525	4000555	SCOP2 (2022-06-29)
H [auth l]	SCOP2 Superfamily	Translational machinery components	8097526	3000571	SCOP2 (2022-06-29)
G [auth i]	SCOP2B Superfamily	Ribosomal protein S8	8097514	3000709	SCOP2B (2022-06-29)
F [auth g]	SCOP2B Superfamily	Ribosomal protein S6	8097458	3001323	SCOP2B (2022-06-29)
D [auth e]	SCOP2B Superfamily	Alpha-L RNA-binding motif	8097528	3001473	SCOP2B (2022-06-29)
C [auth c]	SCOP2B Superfamily	SIS domain/Ribosomal protein S2-like	8097482	3001397	SCOP2B (2022-06-29)
O [auth v]	SCOP2B Superfamily	Ribosomal protein S21	8097456	3002159	SCOP2B (2022-06-29)
L [auth r]	SCOP2B Superfamily	Nucleic acid-binding proteins	8097504	3000135	SCOP2B (2022-06-29)
K [auth q]	SCOP2B Superfamily	Ribosomal protein S16	8097484	3000680	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth p]	Utp12	e6ypup1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
I [auth m]	Utp12	e6ypum1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
H [auth l]	Utp12	e6ypul1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
G [auth i]	Utp12	e6ypui1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
F [auth g]	Utp12	e6ypug1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
E [auth f]	Utp12	e6ypuf1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
D [auth e]	Utp12	e6ypue1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
C [auth c]	Utp12	e6ypuc1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
O [auth v]	Utp12	e6ypuv1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
N [auth u]	Utp12	e6ypuu1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
M [auth s]	Utp12	e6ypus1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
L [auth r]	Utp12	e6ypur1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)
K [auth q]	Utp12	e6ypuq1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E [auth f]	3.30.160.20	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (utative)
E [auth f]	3.30.230.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S5	domain 2	CATH (utative)
D [auth e]	1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41	Chain A, domain 1	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J [auth p]	30S ribosomal protein S15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
I [auth m]	30S ribosomal protein S12	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
H [auth l]	30S ribosomal protein S11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
G [auth i]	30S ribosomal protein S8	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
F [auth g]	30S ribosomal protein S6	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
E [auth f]	30S ribosomal protein S5	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
D [auth e]	30S ribosomal protein S4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
C [auth c]	30S ribosomal protein S2	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
O [auth v]	30S ribosomal protein S21	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
N [auth u]	30S ribosomal protein S20	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
M [auth s]	30S ribosomal protein S18	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
L [auth r]	30S ribosomal protein S17	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
K [auth q]	30S ribosomal protein S16	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
A [auth 2], B [auth 4]	16S ribosomal RNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
J [auth p]	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
J [auth p]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
J [auth p]	IPR000589	Small ribosomal subunit protein uS15	Family
I [auth m]	IPR006032	Small ribosomal subunit protein uS12	Family
I [auth m]	IPR005679	Ribosomal protein uS12, bacteria	Family
I [auth m]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
H [auth l]	IPR001971	Small ribosomal subunit protein uS11	Family
H [auth l]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
H [auth l]	IPR019981	Small ribosomal subunit protein uS11, bacteria	Family
H [auth l]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
G [auth i]	IPR000630	Small ribosomal subunit protein uS8	Family
G [auth i]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
G [auth i]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
F [auth g]	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
F [auth g]	IPR000529	Small ribosomal subunit protein bS6	Family
F [auth g]	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
F [auth g]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
F [auth g]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
E [auth f]	IPR000851	Small ribosomal subunit protein uS5	Family
E [auth f]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
E [auth f]	IPR005712	Small ribosomal subunit protein uS5, bacteria	Family
E [auth f]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
E [auth f]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E [auth f]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
E [auth f]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
D [auth e]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
D [auth e]	IPR002942	RNA-binding S4 domain	Domain
D [auth e]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
D [auth e]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
D [auth e]	IPR022801	Small ribosomal subunit protein uS4	Family
D [auth e]	IPR005709	Small ribosomal subunit protein uS4, bacteria	Family
C [auth c]	IPR005706	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Family
C [auth c]	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
C [auth c]	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
C [auth c]	IPR001865	Small ribosomal subunit protein uS2	Family
O [auth v]	IPR038380	Small ribosomal subunit protein bS21 superfamily	Homologous Superfamily
O [auth v]	IPR018278	Small ribosomal subunit protein bS21, conserved site	Conserved Site
O [auth v]	IPR001911	Small ribosomal subunit protein bS21	Family
N [auth u]	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
N [auth u]	IPR002583	Small ribosomal subunit protein bS20	Family
M [auth s]	IPR001648	Small ribosomal subunit protein bS18	Family
M [auth s]	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
M [auth s]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
L [auth r]	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
L [auth r]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
L [auth r]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
L [auth r]	IPR000266	Small ribosomal subunit protein uS17	Family
K [auth q]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
K [auth q]	IPR000307	Small ribosomal subunit protein bS16	Family
K [auth q]	IPR020592	Small ribosomal subunit protein bS16, conserved site	Conserved Site