6YPA | pdb_00006ypa

The C146A variant of an amidase from Pyrococcus horikoshii with bound glutaramide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6ypad1	Alpha and beta proteins (a+b)	Carbon-nitrogen hydrolase	Carbon-nitrogen hydrolase	Carbamilase	Hypothetical protein PH0642	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
D	d6ypad2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
C	d6ypac1	Alpha and beta proteins (a+b)	Carbon-nitrogen hydrolase	Carbon-nitrogen hydrolase	Carbamilase	Hypothetical protein PH0642	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
C	d6ypac2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
B	d6ypab1	Alpha and beta proteins (a+b)	Carbon-nitrogen hydrolase	Carbon-nitrogen hydrolase	Carbamilase	Hypothetical protein PH0642	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
B	d6ypab2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
A	d6ypaa1	Alpha and beta proteins (a+b)	Carbon-nitrogen hydrolase	Carbon-nitrogen hydrolase	Carbamilase	Hypothetical protein PH0642	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
A	d6ypaa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Carbon-nitrogen hydrolases	8036076	3001086	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Carbon-nitrogen hydrolases	8036076	3001086	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Carbon-nitrogen hydrolases	8036076	3001086	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Carbon-nitrogen hydrolases	8036076	3001086	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Bac_rhodopsin	e6ypaD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Bac_rhodopsin	ECOD (v294.1)
C	Bac_rhodopsin	e6ypaC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Bac_rhodopsin	ECOD (v294.1)
B	Bac_rhodopsin	e6ypaB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Bac_rhodopsin	ECOD (v294.1)
A	Bac_rhodopsin	e6ypaA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Bac_rhodopsin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.60.110.10	Alpha Beta	4-Layer Sandwich	Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase	Carbon-nitrogen hydrolase	CATH (utative)
C	3.60.110.10	Alpha Beta	4-Layer Sandwich	Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase	Carbon-nitrogen hydrolase	CATH (utative)
B	3.60.110.10	Alpha Beta	4-Layer Sandwich	Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase	Carbon-nitrogen hydrolase	CATH (utative)
A	3.60.110.10	Alpha Beta	4-Layer Sandwich	Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase	Carbon-nitrogen hydrolase	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	CN hydrolase domain-containing protein	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036526	Carbon-nitrogen hydrolase superfamily	Homologous Superfamily
A, B, C, D	IPR050345	Aliphatic Amidase/Beta-Ureidopropionase	Family
A, B, C, D	IPR053613	Aliphatic Nitrilase	Family
A, B, C, D	IPR003010	Carbon-nitrogen hydrolase	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.