Crystal structure of histone chaperone APLF acidic domain bound to the histone H2A-H2B-H3-H4 octamer
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2022-06-29) |
| EA [auth e] | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2022-06-29) |
| JA [auth j] | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2022-06-29) |
| Z | SCOP2B Superfamily | Core histone-like | 8067126 | 3001387 | SCOP2B (2022-06-29) |
| AA [auth a] | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
| B | SCOP2 Family | Nucleosome core histones | 8106031 | 4000793 | SCOP2 (2022-06-29) |
| B | SCOP2 Superfamily | Core histone-like | 8106032 | 3001387 | SCOP2 (2022-06-29) |
| B | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
| FA [auth f] | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
| KA [auth k] | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
| BA [auth b] | SCOP2B Superfamily | Core histone-like | 8070525 | 3001387 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Core histone-like | 8070525 | 3001387 | SCOP2B (2022-06-29) |
| GA [auth g] | SCOP2B Superfamily | Core histone-like | 8070525 | 3001387 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Core histone-like | 8070525 | 3001387 | SCOP2B (2022-06-29) |
| LA [auth l] | SCOP2B Superfamily | Core histone-like | 8070525 | 3001387 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Core histone-like | 8070525 | 3001387 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Core histone-like | 8070525 | 3001387 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | Core histone-like | 8070525 | 3001387 | SCOP2B (2022-06-29) |
| CA [auth c] | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
| HA [auth h] | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
| MA [auth m] | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Histone_1 | e6yn1A1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| EA [auth e] | Histone_1 | e6yn1e1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| F | Histone_1 | e6yn1F1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| JA [auth j] | Histone_1 | e6yn1j1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| K | Histone_1 | e6yn1K1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| P | Histone_1 | e6yn1P1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| U | Histone_1 | e6yn1U1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| Z | Histone_1 | e6yn1Z1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| AA [auth a] | Histone | e6yn1a1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| B | Histone | e6yn1B1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| FA [auth f] | Histone | e6yn1f1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| G | Histone | e6yn1G1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| KA [auth k] | Histone | e6yn1k1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| L | Histone | e6yn1L1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| Q | Histone | e6yn1Q1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| V | Histone | e6yn1V1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| BA [auth b] | Histone | e6yn1b1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| C | Histone | e6yn1C1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| GA [auth g] | Histone | e6yn1g1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| H | Histone | e6yn1H1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| LA [auth l] | Histone | e6yn1l1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| M | Histone | e6yn1M1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| R | Histone | e6yn1R1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| W | Histone | e6yn1W1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| CA [auth c] | Histone_1 | e6yn1c1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| D | Histone_1 | e6yn1D1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| HA [auth h] | Histone_1 | e6yn1h1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| I | Histone_1 | e6yn1I1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| MA [auth m] | Histone_1 | e6yn1m1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| N | Histone_1 | e6yn1N1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| S | Histone_1 | e6yn1S1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| X | Histone_1 | e6yn1X1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family | |
| PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR009072 | Histone-fold | Homologous Superfamily | |
| IPR002119 | Histone H2A | Family | |
| IPR032454 | Histone H2A, C-terminal domain | Domain | |
| IPR032458 | Histone H2A conserved site | Conserved Site | |
| IPR007125 | Core Histone H2A/H2B/H3 domain | Domain | |
| IPR009072 | Histone-fold | Homologous Superfamily | |
| IPR055333 | Histone H2B, conserved site | Conserved Site | |
| IPR000558 | Histone H2B | Family | |
| IPR007125 | Core Histone H2A/H2B/H3 domain | Domain | |
| IPR009072 | Histone-fold | Homologous Superfamily | |
| IPR000164 | Histone H3/CENP-A | Family | |
| IPR007125 | Core Histone H2A/H2B/H3 domain | Domain | |
| IPR009072 | Histone-fold | Homologous Superfamily | |
| IPR001951 | Histone H4 | Family | |
| IPR035425 | CENP-T/Histone H4, histone fold | Domain | |
| IPR019809 | Histone H4, conserved site | Conserved Site | |
| IPR004823 | TATA box binding protein associated factor (TAF), histone-like fold domain | Domain | |
| IPR019406 | Aprataxin and PNK-like factor, PBZ domain | Domain | |
| IPR041388 | PNK, FHA domain | Domain | |
| IPR008984 | SMAD/FHA domain superfamily | Homologous Superfamily | |
| IPR039253 | Aprataxin and PNK-like factor | Family |
Pharos: Disease Associations Pharos Homepage Annotation
| Chains | Drug Target   | Associated Disease |
|---|---|---|
| :  Q8IW19 |














