6YJP | pdb_00006yjp

Crystal structure of a complex between glycosylated NKp30 and its deglycosylated tumour ligand B7-H6

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth B]	Pro_isomerase	e6yjpB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)
C [auth A]	WD40, Beta-prop_WDR3_2nd	e6yjpA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: WD40, Beta-prop_WDR3_2nd	ECOD (v294.1)
E	Pro_isomerase	e6yjpE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)
B [auth D]	Pro_isomerase	e6yjpD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)
A [auth C]	WD40, Beta-prop_WDR3_2nd	e6yjpC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: WD40, Beta-prop_WDR3_2nd	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], D [auth B]	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
A [auth C], B [auth D], E	PF07654	Immunoglobulin C1-set domain (C1-set)	Immunoglobulin C1-set domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth A], D [auth B]	Natural cytotoxicity triggering receptor 3	molecular transducer activity signaling receptor activity immune receptor activity identical protein binding protein binding binding	regulation of immune effector process lymphocyte mediated immunity positive regulation of leukocyte mediated immunity positive regulation of response to biotic stimulus regulation of cellular process response to stimulus response to biotic stimulus positive regulation of leukocyte mediated cytotoxicity positive regulation of immune response positive regulation of natural killer cell mediated immunity leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity positive regulation of immune system process regulation of immune effector process lymphocyte mediated immunity positive regulation of leukocyte mediated immunity positive regulation of response to biotic stimulus regulation of cellular process response to stimulus response to biotic stimulus positive regulation of leukocyte mediated cytotoxicity positive regulation of immune response positive regulation of natural killer cell mediated immunity leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity positive regulation of immune system process regulation of biological process regulation of natural killer cell mediated immunity immune response response to other organism regulation of innate immune response response to external stimulus leukocyte mediated cytotoxicity immune effector process regulation of leukocyte mediated immunity regulation of response to stimulus defense response to other organism positive regulation of defense response natural killer cell mediated cytotoxicity regulation of immune response positive regulation of natural killer cell mediated cytotoxicity regulation of cell killing positive regulation of cell killing regulation of defense response regulation of response to biotic stimulus regulation of natural killer cell mediated cytotoxicity biological process involved in interspecies interaction between organisms regulation of response to external stimulus positive regulation of lymphocyte mediated immunity positive regulation of biological process positive regulation of response to stimulus positive regulation of response to external stimulus regulation of response to stress response to stress innate immune response positive regulation of immune effector process response to external biotic stimulus positive regulation of cellular process positive regulation of innate immune response defense response regulation of leukocyte mediated cytotoxicity biological regulation defense response to symbiont regulation of lymphocyte mediated immunity immune system process cellular process cell killing cellular response to stimulus immune response-regulating cell surface receptor signaling pathway signaling cell communication immune response-activating signaling pathway immune response-regulating signaling pathway signal transduction cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway activation of immune response multicellular organismal process cell activation natural killer cell activation lymphocyte activation leukocyte activation T cell activation alpha-beta T cell activation NK T cell activation cell recognition inflammatory response	cell periphery cellular anatomical structure plasma membrane membrane
A [auth C], B [auth D], E	Natural cytotoxicity triggering receptor 3 ligand 1	molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity	multicellular organismal process T cell activation immune system process cell activation alpha-beta T cell activation cellular process lymphocyte activation NK T cell activation leukocyte activation	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], D [auth B]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
C [auth A], D [auth B]	IPR043226	Natural cytotoxicity triggering receptor 3	Family
C [auth A], D [auth B]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C [auth A], D [auth B]	IPR013106	Immunoglobulin V-set domain	Domain
C [auth A], D [auth B]	IPR003599	Immunoglobulin domain subtype	Domain
C [auth A], D [auth B]	IPR007110	Immunoglobulin-like domain	Domain
A [auth C], B [auth D], E	IPR003597	Immunoglobulin C1-set	Domain
A [auth C], B [auth D], E	IPR050462	Retroviral Gag-Pol polyproteins	Family
A [auth C], B [auth D], E	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth C], B [auth D], E	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth C], B [auth D], E	IPR010999	Retroviral matrix protein	Homologous Superfamily
A [auth C], B [auth D], E	IPR036946	Gamma-retroviral matrix domain superfamily	Homologous Superfamily
A [auth C], B [auth D], E	IPR003599	Immunoglobulin domain subtype	Domain
A [auth C], B [auth D], E	IPR007110	Immunoglobulin-like domain	Domain
A [auth C], B [auth D], E	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth A], D [auth B]	Pharos: O14931	malaria autism spectrum disorder Crohn disease Hashimoto thyroiditis laryngeal squamous cell carcinoma psoriatic arthritis Stevens-Johnson syndrome cancer cutaneous lupus erythematosus hypertensive disorder lung adenocarcinoma membranous glomerulonephritis rheumatoid arthritis tuberculosis cervical cancer malaria autism spectrum disorder Crohn disease Hashimoto thyroiditis laryngeal squamous cell carcinoma psoriatic arthritis Stevens-Johnson syndrome cancer cutaneous lupus erythematosus hypertensive disorder lung adenocarcinoma membranous glomerulonephritis rheumatoid arthritis tuberculosis cervical cancer Dengue hemorrhagic fever interstitial cystitis lung carcinoma myositis squamous cell lung carcinoma
A [auth C], B [auth D], E	Pharos: Q68D85	psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.