6YE4 | pdb_00006ye4

Structure of ExbB pentamer from Serratia marcescens by single particle cryo electron microscopy

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ERaptor_Ne6ye4E1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Raptor_NECOD (v294.1)
DRaptor_Ne6ye4D1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Raptor_NECOD (v294.1)
CRaptor_Ne6ye4C1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Raptor_NECOD (v294.1)
BRaptor_Ne6ye4B1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Raptor_NECOD (v294.1)
Ae6ye4A1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF:ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Biopolymer transport protein ExbB

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR014164TonB-system energizer ExbB type-1Family
A, B, C, D, E
IPR002898MotA/TolQ/ExbB proton channelDomain
A, B, C, D, E
IPR050790ExbB/TolQ Biopolymer TransportFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneAlpha-helical polytopicMotA/TolQ/ExbB channelMotA/TolQ/ExbB channel

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM