6XZD

Influenza C virus polymerase complex without chicken ANP32A - Subclass 2


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth AP1]PF00603e6xzdAP12 A: a+b complex topologyX: Polymerase acidic protein (From Topology)H: Polymerase acidic protein (From Topology)T: Polymerase acidic proteinF: PF00603ECOD (1.6)
B [auth AP1]PF00603e6xzdAP11 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF00603ECOD (1.6)
C [auth BP1]PF00602e6xzdBP11 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF00602ECOD (1.6)
C [auth BP1]PF00602e6xzdBP12 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00602ECOD (1.6)
C [auth BP1]PF00602e6xzdBP13 A: extended segmentsX: RNA polymerase PB1 C-terminal fragment (From Topology)H: RNA polymerase PB1 C-terminal fragment (From Topology)T: RNA polymerase PB1 C-terminal fragmentF: PF00602ECOD (1.6)
F [auth EP1]PF00602e6xzdEP12 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF00602ECOD (1.6)
F [auth EP1]PF00602e6xzdEP11 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00602ECOD (1.6)
D [auth CP1]PF00604,PF20951e6xzdCP17 A: alpha arraysX: PB2 '627' domain-related (From Homology)H: PB2 '627' domain-relatedT: Polymerase basic protein 2 (PB2) '627' domainF: PF00604,PF20951ECOD (1.6)
D [auth CP1]PF20950e6xzdCP12 A: alpha arraysX: Helical domain in PB2 (From Topology)H: Helical domain in PB2 (From Topology)T: Helical domain in PB2F: PF20950ECOD (1.6)
D [auth CP1]PF20952e6xzdCP16 A: a+b two layersX: PB2 C-terminal domain-like (From Topology)H: PB2 C-terminal domain-like (From Topology)T: PB2 C-terminal domain-likeF: PF20952ECOD (1.6)
D [auth CP1]PF20948e6xzdCP11 A: a+b two layersX: a+b domain in PB2 (From Topology)H: a+b domain in PB2 (From Topology)T: a+b domain in PB2F: PF20948ECOD (1.6)
D [auth CP1]PF00604e6xzdCP14 A: a+b three layersX: Polymerase basic protein 2 cap-binding domain (From Topology)H: Polymerase basic protein 2 cap-binding domain (From Topology)T: Polymerase basic protein 2 cap-binding domainF: PF00604ECOD (1.6)
D [auth CP1]PF20949e6xzdCP15 A: a+b complex topologyX: Middle domain in PB2 (From Topology)H: Middle domain in PB2 (From Topology)T: Middle domain in PB2F: PF20949ECOD (1.6)
D [auth CP1]PF20947e6xzdCP13 A: extended segmentsX: RNA polymerase PB2 N-terminal fragment (From Topology)H: RNA polymerase PB2 N-terminal fragment (From Topology)T: RNA polymerase PB2 N-terminal fragmentF: PF20947ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth AP1],
E [auth DP1]
PF00603Influenza RNA-dependent RNA polymerase subunit PA (Flu_PA)Influenza RNA-dependent RNA polymerase subunit PA- Family
C [auth BP1],
F [auth EP1]
PF00602Influenza RNA-dependent RNA polymerase subunit PB1 (Flu_PB1)Influenza RNA-dependent RNA polymerase subunit PB1- Family
D [auth CP1],
G [auth FP1]
PF20948Influenza RNA polymerase PB2 second domain (Flu_PB2_2nd)Influenza RNA polymerase PB2 second domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the domain of the Flu PB protein that follows the N-terminal extended region.
Domain
D [auth CP1],
G [auth FP1]
PF00604Influenza RNA polymerase PB2 CAP binding domain (Flu_PB2_5th)Influenza RNA polymerase PB2 CAP binding domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the CAP binding domain [2].
Domain
D [auth CP1],
G [auth FP1]
PF20947Influenza RNA polymerase PB2 N-terminal region (Flu_PB2_1st)Influenza RNA polymerase PB2 N-terminal region- Family
D [auth CP1],
G [auth FP1]
PF20949Influenza RNA polymerase PB2 middle domain (Flu_PB2_3rd)Influenza RNA polymerase PB2 middle domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the middle domain in Flu PB2 protein.
Domain
D [auth CP1],
G [auth FP1]
PF20951Influenza RNA polymerase PB2 6th domain (Flu_PB2_6th)Influenza RNA polymerase PB2 6th domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the 6th domain of PB2.
Domain
D [auth CP1],
G [auth FP1]
PF20950Influenza RNA polymerase PB2 helical domain (Flu_PB2_4th)Influenza RNA polymerase PB2 helical domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the helical domain of Flu PB2 protein.
Domain
D [auth CP1],
G [auth FP1]
PF20952Influenza RNA polymerase PB2 C-terminal domain (Flu_PB2_7th)Influenza RNA polymerase PB2 C-terminal domainInfluenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ...Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase active site, whereas PB2 and PA/P3 contain, respectively, cap-binding [1] and endonuclease domains required for transcription initiation by cap-snatching [2]. This entry represents the C-terminal domain of Flu PB2 protein.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth IN1]RNA (5'-R(*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*GP*CP*CP*CP*UP*GP*C)-3')---
B [auth AP1],
E [auth DP1]
Polymerase acidic protein
C [auth BP1],
F [auth EP1]
RNA-directed RNA polymerase catalytic subunit
D [auth CP1],
G [auth FP1]
Polymerase basic protein 2