6XZC | pdb_00006xzc

CryoEM structure of the ring-shaped virulence factor EspB from Mycobacterium tuberculosis

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	SF3A2	e6xzcG1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SF3A2	ECOD (v294.1)
F	SF3A2	e6xzcF1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SF3A2	ECOD (v294.1)
E	SF3A2	e6xzcE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SF3A2	ECOD (v294.1)
D	SF3A2	e6xzcD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SF3A2	ECOD (v294.1)
C	SF3A2	e6xzcC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SF3A2	ECOD (v294.1)
B	SF3A2	e6xzcB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SF3A2	ECOD (v294.1)
A	SF3A2	e6xzcA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SF3A2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF21856	ESX-1 secretion-associated protein EspB, PPE domain (EspB_PPE)	ESX-1 secretion-associated protein EspB, PPE domain	This entry represents the PPe domain of ESX-1 secretion- associated protein EspB, a member of the PE/PPE family and the only one described to date to form higher-order oligomers [1-3]. It contains PE (Pro-Glu) and PPE (Pro-Pro-Glu) domains, and a C-t ...	This entry represents the PPe domain of ESX-1 secretion- associated protein EspB, a member of the PE/PPE family and the only one described to date to form higher-order oligomers [1-3]. It contains PE (Pro-Glu) and PPE (Pro-Pro-Glu) domains, and a C-terminal domain, which is processed by MycP1 protease during secretion. EspB oligomerises into a cylinder-like heptamer through its N-terminal domain, that form channel-like structures [1-3].	Domain
A, B, C, D, E A, B, C, D, E, F, G	PF18625	ESX-1 secreted protein B PE domain (EspB_PE)	ESX-1 secreted protein B PE domain	The ESX-1 secretion system is an important virulence determinant in Mycobacterium tuberculosis. ESX-1 secreted protein B (EspB) contains putative PE (Pro-Glu) and PPE (Pro-Pro-Glu) domains, and a C-terminal domain, which is processed by MycP1 protea ...	The ESX-1 secretion system is an important virulence determinant in Mycobacterium tuberculosis. ESX-1 secreted protein B (EspB) contains putative PE (Pro-Glu) and PPE (Pro-Pro-Glu) domains, and a C-terminal domain, which is processed by MycP1 protease during secretion. This domain represents the PE domain located at the N-terminal region of EspB which carries the conserved YxxxD/E secretion motif [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	ESX-1 secretion-associated protein EspB	identical protein binding protein binding binding	biological process involved in interspecies interaction between organisms biological process involved in interaction with host biological process involved in symbiotic interaction establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein secretion by the type VII secretion system protein localization to extracellular region transmembrane transport localization biological process involved in interspecies interaction between organisms biological process involved in interaction with host biological process involved in symbiotic interaction establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein secretion by the type VII secretion system protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host autophagy symbiont-mediated perturbation of host process symbiont-mediated perturbation of host autophagy modulation of process of another organism	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR041275	ESX-1 secretion-associated protein EspB, PE domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR054056	ESX-1 secretion-associated protein EspB, PPE domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR038332	PPE superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.