Annotations: 6XRR

Structure of SciW bound to the Rhs1 Transmembrane Domain from Salmonella typhimurium

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K	WD40	e6xrrK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
J [auth H]	WD40	e6xrrH1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
H [auth F]	WD40	e6xrrF1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
G [auth D]	WD40	e6xrrD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
E [auth B]	WD40	e6xrrB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
D [auth A]	WD40	e6xrrA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
B [auth I]	WD40	e6xrrI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)
A [auth E]	WD40	e6xrrE1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: WD40	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
K	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
J [auth H]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
H [auth F]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
G [auth D]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
E [auth B]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
D [auth A]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
B [auth I]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)
A [auth E]	3.40.1000.10	Alpha Beta	3-Layer(aba) Sandwich	Protein Transport Mog1p	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], H [auth F], J [auth H], K	PF08786	DcrB (DcrB)	DcrB	DcrB is a bacterial protein required for phages C1 and C6 adsorption [1,2]. It may be involved in the opening or formation of diffusion channels in the outer membrane [2]. Structurally, it consist of an antiparallel beta sheet with some alpha helical ...	DcrB is a bacterial protein required for phages C1 and C6 adsorption [1,2]. It may be involved in the opening or formation of diffusion channels in the outer membrane [2]. Structurally, it consist of an antiparallel beta sheet with some alpha helical regions.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth J], F [auth C], I [auth G], L	IPR057925	Double-stranded DNA deaminase toxin A, prePAAR motif	Domain
C [auth J], F [auth C], I [auth G], L	IPR050708	Type VI secretion system VgrG/RHS	Family
C [auth J], F [auth C], I [auth G], L	IPR006530	YD repeat	Repeat
C [auth J], F [auth C], I [auth G], L	IPR022385	Rhs repeat-associated core	Domain
C [auth J], F [auth C], I [auth G], L	IPR045351	Domain of unknown function DUF6531	Domain
C [auth J], F [auth C], I [auth G], L	IPR008727	PAAR motif	Repeat
C [auth J], F [auth C], I [auth G], L	IPR056823	Teneurin-like, YD-shell	Domain
C [auth J], F [auth C], I [auth G], L	IPR029103	Bacterial toxin 47	Domain
C [auth J], F [auth C], I [auth G], L	IPR011044	Quinoprotein amine dehydrogenase, beta chain-like	Homologous Superfamily
C [auth J], F [auth C], I [auth G], L	IPR031325	RHS repeat	Repeat
A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], H [auth F], J [auth H], K	IPR014894	Inner membrane lipoprotein DcrB/EagT6	Family
A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], A [auth E], B [auth I], D [auth A], E [auth B], G [auth D], H [auth F], J [auth H], K	IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6XRR | pdb_00006xrr

Structure of SciW bound to the Rhs1 Transmembrane Domain from Salmonella typhimurium

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage