6XRR | pdb_00006xrr

Structure of SciW bound to the Rhs1 Transmembrane Domain from Salmonella typhimurium

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
KRibosomal_L36e6xrrK1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L36ECOD (v294.1)
J [auth H]Ribosomal_L36e6xrrH1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L36ECOD (v294.1)
H [auth F]Ribosomal_L36e6xrrF1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L36ECOD (v294.1)
G [auth D]Ribosomal_L36e6xrrD1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L36ECOD (v294.1)
E [auth B]Ribosomal_L36e6xrrB1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L36ECOD (v294.1)
D [auth A]Ribosomal_L36e6xrrA1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L36ECOD (v294.1)
B [auth I]Ribosomal_L36e6xrrI1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L36ECOD (v294.1)
A [auth E]Ribosomal_L36e6xrrE1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L36ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
K3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
J [auth H]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
H [auth F]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
G [auth D]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
E [auth B]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
D [auth A]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
B [auth I]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)
A [auth E]3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p Chain ACATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF08786DcrB (DcrB)DcrBDcrB is a bacterial protein required for phages C1 and C6 adsorption [1,2]. It may be involved in the opening or formation of diffusion channels in the outer membrane [2]. Structurally, it consist of an antiparallel beta sheet with some alpha helical ...DcrB is a bacterial protein required for phages C1 and C6 adsorption [1,2]. It may be involved in the opening or formation of diffusion channels in the outer membrane [2]. Structurally, it consist of an antiparallel beta sheet with some alpha helical regions.
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth J],
F [auth C],
I [auth G],
L		IPR057925Double-stranded DNA deaminase toxin A, prePAAR motifDomain
C [auth J],
F [auth C],
I [auth G],
L		IPR050708Type VI secretion system VgrG/RHSFamily
C [auth J],
F [auth C],
I [auth G],
L		IPR006530YD repeatRepeat
C [auth J],
F [auth C],
I [auth G],
L		IPR022385Rhs repeat-associated coreDomain
C [auth J],
F [auth C],
I [auth G],
L		IPR045351Domain of unknown function DUF6531Domain
C [auth J],
F [auth C],
I [auth G],
L		IPR008727PAAR motifRepeat
C [auth J],
F [auth C],
I [auth G],
L		IPR056823Teneurin-like, YD-shellDomain
C [auth J],
F [auth C],
I [auth G],
L		IPR029103Bacterial toxin 47Domain
C [auth J],
F [auth C],
I [auth G],
L		IPR011044Quinoprotein amine dehydrogenase, beta chain-likeHomologous Superfamily
C [auth J],
F [auth C],
I [auth G],
L		IPR031325RHS repeatRepeat
IPR014894Inner membrane lipoprotein DcrB/EagT6Family
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily