6XB9 | pdb_00006xb9

Crystal structure of Azotobacter vinelandii 3-mercaptopropionic acid dioxygenase in complex with 3-hydroxypropionic acid

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d6xb9l_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
K	d6xb9k_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
J	d6xb9j_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
I	d6xb9i_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
H	d6xb9h_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
G	d6xb9g_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
F	d6xb9f_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
E	d6xb9e_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
D	d6xb9d_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
C	d6xb9c_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
B	d6xb9b_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)
A	d6xb9a_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Cysteine dioxygenase type I	automated matches	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)
J	SCOP2 Family	Cysteine dioxygenase type I	8102654	4002121	SCOP2 (2022-06-29)
J	SCOP2 Superfamily	RmlC-like cupins	8102655	3001825	SCOP2 (2022-06-29)
I	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RmlC-like cupins	8102655	3001825	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Raptor_N	e6xb9L1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
K	Raptor_N	e6xb9K1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
J	Raptor_N	e6xb9J1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
I	Raptor_N	e6xb9I1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
H	Raptor_N	e6xb9H1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
G	Raptor_N	e6xb9G1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
F	Raptor_N	e6xb9F1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
E	Raptor_N	e6xb9E1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
D	Raptor_N	e6xb9D1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
C	Raptor_N	e6xb9C1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
B	Raptor_N	e6xb9B1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
A	Med6	e6xb9A1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Med6	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Cysteine dioxygenase type I protein	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen oxidoreductase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen catalytic activity dioxygenase activity cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR010300	Cysteine dioxygenase type I	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.