6X6S | pdb_00006x6s

Cryo-EM Structure of the Helicobacter pylori OMC

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZD [auth KY]	GAF	e6x6sKY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
XE [auth MY]	GAF	e6x6sMY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
V [auth BY]	GAF	e6x6sBY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
TA [auth DY]	GAF	e6x6sDY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
RB [auth FY]	GAF	e6x6sFY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
PC [auth HY]	GAF	e6x6sHY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
ND [auth JY]	GAF	e6x6sJY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
LE [auth LY]	GAF	e6x6sLY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
JF [auth NY]	GAF	e6x6sNY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
J [auth AY]	GAF	e6x6sAY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
HA [auth CY]	GAF	e6x6sCY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
FB [auth EY]	GAF	e6x6sEY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
DC [auth GY]	GAF	e6x6sGY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)
BD [auth IY]	GAF	e6x6sIY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	PF03743	Bacterial conjugation TrbI-like protein (TrbI)	Bacterial conjugation TrbI-like protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	Cag pathogenicity island protein (Cag7)	-	-	cellular anatomical structure membrane
AD [auth IX], CC [auth GX], EB [auth EX], GA [auth CX], I [auth AX], AD [auth IX], CC [auth GX], EB [auth EX], GA [auth CX], I [auth AX], IF [auth NX], KE [auth LX], MD [auth JX], OC [auth HX], QB [auth FX], SA [auth DX], U [auth BX], WE [auth MX], YD [auth KX]	Type IV secretion system apparatus protein CagX	-	-	-
BC [auth GU], DB [auth EU], FA [auth CU], H [auth AU], HF [auth NU], BC [auth GU], DB [auth EU], FA [auth CU], H [auth AU], HF [auth NU], JE [auth LU], LD [auth JU], NC [auth HU], PB [auth FU], RA [auth DU], T [auth BU], VE [auth MU], XD [auth KU], ZC [auth IU]	Unknown protein fragment	-	-	-
AC [auth GT], BE [auth Kt], CB [auth ET], DD [auth It], EA [auth CT], AC [auth GT], BE [auth Kt], CB [auth ET], DD [auth It], EA [auth CT], FC [auth Gt], G [auth AT], GF [auth NT], HB [auth Et], IE [auth LT], JA [auth Ct], KD [auth JT], L [auth At], LF [auth Nt], MC [auth HT], NE [auth Lt], OB [auth FT], PD [auth Jt], QA [auth DT], RC [auth Ht], S [auth BT], TB [auth Ft], UE [auth MT], VA [auth Dt], WD [auth KT], X [auth Bt], YC [auth IT], ZE [auth Mt]	Type IV secretion system apparatus protein CagT	-	-	-
AE [auth Km], BB [auth EM], CD [auth Im], DA [auth CM], EC [auth Gm], AE [auth Km], BB [auth EM], CD [auth Im], DA [auth CM], EC [auth Gm], F [auth AM], FF [auth NM], GB [auth Em], HE [auth LM], IA [auth Cm], JD [auth JM], K [auth Am], KF [auth Nm], LC [auth HM], ME [auth Lm], NB [auth FM], OD [auth Jm], PA [auth DM], QC [auth Hm], R [auth BM], SB [auth Fm], TE [auth MM], UA [auth Dm], VD [auth KM], W [auth Bm], XC [auth IM], YE [auth Mm], ZB [auth GM]	Type IV secretion system apparatus protein CagM	-	-	-
A [auth AA], AA [auth CC], AB [auth EE], AF [auth NA], B [auth AB], A [auth AA], AA [auth CC], AB [auth EE], AF [auth NA], B [auth AB], BA [auth CD], BF [auth NB], C [auth AC], CA [auth CE], CE [auth LA], CF [auth NC], D [auth AD], DE [auth LB], DF [auth ND], E [auth AE], ED [auth JA], EE [auth LC], EF [auth NE], FD [auth JB], FE [auth LD], GC [auth HA], GD [auth JC], GE [auth LE], HC [auth HB], HD [auth JD], IB [auth FA], IC [auth HC], ID [auth JE], JB [auth FB], JC [auth HD], KA [auth DA], KB [auth FC], KC [auth HE], LA [auth DB], LB [auth FD], M [auth BA], MA [auth DC], MB [auth FE], N [auth BB], NA [auth DD], O [auth BC], OA [auth DE], OE [auth MA], P [auth BD], PE [auth MB], Q [auth BE], QD [auth KA], QE [auth MC], RD [auth KB], RE [auth MD], SC [auth IA], SD [auth KC], SE [auth ME], TC [auth IB], TD [auth KD], UB [auth GA], UC [auth IC], UD [auth KE], VB [auth GB], VC [auth ID], WA [auth EA], WB [auth GC], WC [auth IE], XA [auth EB], XB [auth GD], Y [auth CA], YA [auth EC], YB [auth GE], Z [auth CB], ZA [auth ED]	Type IV secretion system apparatus protein Cag3	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	IPR010853	DC-EC	Repeat
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	IPR029285	CagY type 1 repeat	Repeat
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], BD [auth IY], DC [auth GY], FB [auth EY], HA [auth CY], J [auth AY], JF [auth NY], LE [auth LY], ND [auth JY], PC [auth HY], RB [auth FY], TA [auth DY], V [auth BY], XE [auth MY], ZD [auth KY]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family
AC [auth GT], BE [auth Kt], CB [auth ET], DD [auth It], EA [auth CT], AC [auth GT], BE [auth Kt], CB [auth ET], DD [auth It], EA [auth CT], FC [auth Gt], G [auth AT], GF [auth NT], HB [auth Et], IE [auth LT], JA [auth Ct], KD [auth JT], L [auth At], LF [auth Nt], MC [auth HT], NE [auth Lt], OB [auth FT], PD [auth Jt], QA [auth DT], RC [auth Ht], S [auth BT], TB [auth Ft], UE [auth MT], VA [auth Dt], WD [auth KT], X [auth Bt], YC [auth IT], ZE [auth Mt]	IPR025264	Cag pathogenicity island protein Cag12	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.