6X6L | pdb_00006x6l

Cryo-EM Structure of CagX and CagY within the dCag3 Helicobacter pylori PR

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Q [auth QX]	CagX_N	e6x6lQX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
P [auth PX]	CagX_N	e6x6lPX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
O [auth OX]	CagX_N	e6x6lOX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
N [auth NX]	CagX_N	e6x6lNX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
M [auth MX]	CagX_N	e6x6lMX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
L [auth LX]	CagX_N	e6x6lLX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
K [auth KX]	CagX_N	e6x6lKX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
J [auth JX]	CagX_N	e6x6lJX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
I [auth IX]	CagX_N	e6x6lIX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
H [auth HX]	CagX_N	e6x6lHX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
G [auth GX]	CagX_N	e6x6lGX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
F [auth FX]	CagX_N	e6x6lFX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
E [auth EX]	CagX_N	e6x6lEX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
D [auth DX]	CagX_N	e6x6lDX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
C [auth CX]	CagX_N	e6x6lCX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
B [auth BX]	CagX_N	e6x6lBX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
A [auth AX]	CagX_N	e6x6lAX1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	PF07337	DC-EC Repeat (CagY_M)	DC-EC Repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	Cag pathogenicity island protein (Cag7)	-	-	cellular anatomical structure membrane
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	Cag pathogenicity island protein (Cag8)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR010853	DC-EC	Repeat
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR029285	CagY type 1 repeat	Repeat
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR033645	VirB9/CagX/TrbG, C-terminal	Domain
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR004357	Type IV secretion system CagX conjugation protein	Family
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR038161	VirB9/CagX/TrbG, C-terminal domain superfamily	Homologous Superfamily
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR010258	Conjugal transfer, TrbG/VirB9/CagX	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.