6X6L | pdb_00006x6l

Cryo-EM Structure of CagX and CagY within the dCag3 Helicobacter pylori PR

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Q [auth QX]	PA14	e6x6lQX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
P [auth PX]	PA14	e6x6lPX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
O [auth OX]	PA14	e6x6lOX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
N [auth NX]	PA14	e6x6lNX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
M [auth MX]	PA14	e6x6lMX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
L [auth LX]	PA14	e6x6lLX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
K [auth KX]	PA14	e6x6lKX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
J [auth JX]	PA14	e6x6lJX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
I [auth IX]	PA14	e6x6lIX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
H [auth HX]	PA14	e6x6lHX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
G [auth GX]	PA14	e6x6lGX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
F [auth FX]	PA14	e6x6lFX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
E [auth EX]	PA14	e6x6lEX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
D [auth DX]	PA14	e6x6lDX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
C [auth CX]	PA14	e6x6lCX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
B [auth BX]	PA14	e6x6lBX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)
A [auth AX]	PA14	e6x6lAX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	PF07337	DC-EC Repeat (CagY_M)	DC-EC Repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	Cag pathogenicity island protein (Cag7)	-	-	cellular anatomical structure membrane
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	Cag pathogenicity island protein (Cag8)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR010853	DC-EC	Repeat
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR029285	CagY type 1 repeat	Repeat
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR033645	VirB9/CagX/TrbG, C-terminal	Domain
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR004357	Type IV secretion system CagX conjugation protein	Family
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR038161	VirB9/CagX/TrbG, C-terminal domain superfamily	Homologous Superfamily
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR010258	Conjugal transfer TrbG/VirB9/CagX	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.