6X6K

Cryo-EM Structure of the Helicobacter pylori dCag3 OMC

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth AX]	PF03524	e6x6kAX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
CA [auth JX]	PF03524	e6x6kJX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
E [auth BX]	PF03524	e6x6kBX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
FA [auth KX]	PF03524	e6x6kKX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
H [auth CX]	PF03524	e6x6kCX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
IA [auth LX]	PF03524	e6x6kLX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
K [auth DX]	PF03524	e6x6kDX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
LA [auth MX]	PF03524	e6x6kMX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
N [auth EX]	PF03524	e6x6kEX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
OA [auth NX]	PF03524	e6x6kNX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
Q [auth FX]	PF03524	e6x6kFX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
T [auth GX]	PF03524	e6x6kGX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
W [auth HX]	PF03524	e6x6kHX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
Z [auth IX]	PF03524	e6x6kIX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF03524	ECOD (1.6)
AA [auth IY]	PF03743	e6x6kIY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
C [auth AY]	PF03743	e6x6kAY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
DA [auth JY]	PF03743	e6x6kJY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
F [auth BY]	PF03743	e6x6kBY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
GA [auth KY]	PF03743	e6x6kKY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
I [auth CY]	PF03743	e6x6kCY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
JA [auth LY]	PF03743	e6x6kLY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
L [auth DY]	PF03743	e6x6kDY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
MA [auth MY]	PF03743	e6x6kMY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
O [auth EY]	PF03743	e6x6kEY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
PA [auth NY]	PF03743	e6x6kNY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
R [auth FY]	PF03743	e6x6kFY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
U [auth GY]	PF03743	e6x6kGY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)
X [auth HY]	PF03743	e6x6kHY1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: PF03743	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AT], BA [auth JT], D [auth BT], EA [auth KT], G [auth CT], A [auth AT], BA [auth JT], D [auth BT], EA [auth KT], G [auth CT], HA [auth LT], J [auth DT], KA [auth MT], M [auth ET], NA [auth NT], P [auth FT], S [auth GT], V [auth HT], Y [auth IT]	PF13117	Cag pathogenicity island protein Cag12 (Cag12)	Cag pathogenicity island protein Cag12	-	Family
B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], IA [auth LX], K [auth DX], LA [auth MX], N [auth EX], OA [auth NX], Q [auth FX], T [auth GX], W [auth HX], Z [auth IX]	PF03524	Conjugal transfer protein (CagX)	Conjugal transfer protein	-	Family
AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], I [auth CY], JA [auth LY], L [auth DY], MA [auth MY], O [auth EY], PA [auth NY], R [auth FY], U [auth GY], X [auth HY]	PF03743	Bacterial conjugation TrbI-like protein (TrbI)	Bacterial conjugation TrbI-like protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AT], BA [auth JT], D [auth BT], EA [auth KT], G [auth CT], A [auth AT], BA [auth JT], D [auth BT], EA [auth KT], G [auth CT], HA [auth LT], J [auth DT], KA [auth MT], M [auth ET], NA [auth NT], P [auth FT], S [auth GT], V [auth HT], Y [auth IT]	Cag pathogenicity island protein	-	-	-
B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], IA [auth LX], K [auth DX], LA [auth MX], N [auth EX], OA [auth NX], Q [auth FX], T [auth GX], W [auth HX], Z [auth IX]	Type IV secretion system apparatus protein CagX	-	-	-
AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], I [auth CY], JA [auth LY], L [auth DY], MA [auth MY], O [auth EY], PA [auth NY], R [auth FY], U [auth GY], X [auth HY]	Cag pathogenicity island protein (Cag7)	-	-	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AT], BA [auth JT], D [auth BT], EA [auth KT], G [auth CT], A [auth AT], BA [auth JT], D [auth BT], EA [auth KT], G [auth CT], HA [auth LT], J [auth DT], KA [auth MT], M [auth ET], NA [auth NT], P [auth FT], S [auth GT], V [auth HT], Y [auth IT]	IPR025264	Cag pathogenicity island protein Cag12	Family
B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], IA [auth LX], K [auth DX], LA [auth MX], N [auth EX], OA [auth NX], Q [auth FX], T [auth GX], W [auth HX], Z [auth IX]	IPR033645	VirB9/CagX/TrbG, C-terminal	Domain
B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], IA [auth LX], K [auth DX], LA [auth MX], N [auth EX], OA [auth NX], Q [auth FX], T [auth GX], W [auth HX], Z [auth IX]	IPR004357	Type IV secretion system CagX conjugation protein	Family
B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], IA [auth LX], K [auth DX], LA [auth MX], N [auth EX], OA [auth NX], Q [auth FX], T [auth GX], W [auth HX], Z [auth IX]	IPR038161	VirB9/CagX/TrbG, C-terminal domain superfamily	Homologous Superfamily
B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], B [auth AX], CA [auth JX], E [auth BX], FA [auth KX], H [auth CX], IA [auth LX], K [auth DX], LA [auth MX], N [auth EX], OA [auth NX], Q [auth FX], T [auth GX], W [auth HX], Z [auth IX]	IPR010258	Conjugal transfer, TrbG/VirB9/CagX	Family
AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], I [auth CY], JA [auth LY], L [auth DY], MA [auth MY], O [auth EY], PA [auth NY], R [auth FY], U [auth GY], X [auth HY]	IPR010853	DC-EC	Repeat
AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], I [auth CY], JA [auth LY], L [auth DY], MA [auth MY], O [auth EY], PA [auth NY], R [auth FY], U [auth GY], X [auth HY]	IPR029285	CagY type 1 repeat	Repeat
AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], I [auth CY], JA [auth LY], L [auth DY], MA [auth MY], O [auth EY], PA [auth NY], R [auth FY], U [auth GY], X [auth HY]	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], AA [auth IY], C [auth AY], DA [auth JY], F [auth BY], GA [auth KY], I [auth CY], JA [auth LY], L [auth DY], MA [auth MY], O [auth EY], PA [auth NY], R [auth FY], U [auth GY], X [auth HY]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth AT], AA [auth IY], B [auth AX], BA [auth JT], C [auth AY] A [auth AT], AA [auth IY], B [auth AX], BA [auth JT], C [auth AY], CA [auth JX], D [auth BT], DA [auth JY], E [auth BX], EA [auth KT], F [auth BY], FA [auth KX], G [auth CT], GA [auth KY], H [auth CX], HA [auth LT], I [auth CY], IA [auth LX], J [auth DT], JA [auth LY], K [auth DX], KA [auth MT], L [auth DY], LA [auth MX], M [auth ET], MA [auth MY], N [auth EX], NA [auth NT], O [auth EY], OA [auth NX], P [auth FT], PA [auth NY], Q [auth FX], R [auth FY], S [auth GT], T [auth GX], U [auth GY], V [auth HT], W [auth HX], X [auth HY], Y [auth IT], Z [auth IX]	OPM	Transmembrane	Alpha-helical polytopic	Type IV secretory system	Type IV secretion system, VirB10/TraB /TrbI