6X6J | pdb_00006x6j

Cryo-EM Structure of CagX and CagY within the Helicobacter pylori PR

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AA [auth JY]	ATP-synt_C	e6x6jJY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
CA [auth LY]	ATP-synt_C	e6x6jLY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
DA [auth MY]	ATP-synt_C	e6x6jMY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
EA [auth NY]	ATP-synt_C	e6x6jNY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
FA [auth OY]	ATP-synt_C	e6x6jOY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
GA [auth PY]	ATP-synt_C	e6x6jPY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
HA [auth QY]	ATP-synt_C	e6x6jQY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
R [auth AY]	ATP-synt_C	e6x6jAY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
T [auth CY]	ATP-synt_C	e6x6jCY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
U [auth DY]	ATP-synt_C	e6x6jDY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
V [auth EY]	ATP-synt_C	e6x6jEY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
W [auth FY]	ATP-synt_C	e6x6jFY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
X [auth GY]	ATP-synt_C	e6x6jGY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
Z [auth IY]	ATP-synt_C	e6x6jIY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
Y [auth HY]	ATP-synt_C	e6x6jHY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
S [auth BY]	ATP-synt_C	e6x6jBY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
BA [auth KY]	ATP-synt_C	e6x6jKY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
A [auth AX]	PA14	e6x6jAX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
B [auth BX]	PA14	e6x6jBX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
C [auth CX]	PA14	e6x6jCX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
D [auth DX]	PA14	e6x6jDX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
E [auth EX]	PA14	e6x6jEX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
F [auth FX]	PA14	e6x6jFX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
H [auth HX]	PA14	e6x6jHX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
I [auth IX]	PA14	e6x6jIX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
L [auth LX]	PA14	e6x6jLX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
M [auth MX]	PA14	e6x6jMX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
N [auth NX]	PA14	e6x6jNX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
O [auth OX]	PA14	e6x6jOX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
P [auth PX]	PA14	e6x6jPX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
Q [auth QX]	PA14	e6x6jQX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
K [auth KX]	PA14	e6x6jKX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
J [auth JX]	PA14	e6x6jJX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)
G [auth GX]	PA14	e6x6jGX1	A: alpha arrays	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	PF07337	DC-EC Repeat (CagY_M)	DC-EC Repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	Cag pathogenicity island protein (Cag7)	-	-	cellular anatomical structure membrane
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	Cag pathogenicity island protein (Cag8)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR010853	DC-EC	Repeat
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR029285	CagY type 1 repeat	Repeat
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], AA [auth JY], BA [auth KY], CA [auth LY], DA [auth MY], EA [auth NY], FA [auth OY], GA [auth PY], HA [auth QY], R [auth AY], S [auth BY], T [auth CY], U [auth DY], V [auth EY], W [auth FY], X [auth GY], Y [auth HY], Z [auth IY]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR033645	VirB9/CagX/TrbG, C-terminal	Domain
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR004357	Type IV secretion system CagX conjugation protein	Family
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR038161	VirB9/CagX/TrbG, C-terminal domain superfamily	Homologous Superfamily
A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], A [auth AX], B [auth BX], C [auth CX], D [auth DX], E [auth EX], F [auth FX], G [auth GX], H [auth HX], I [auth IX], J [auth JX], K [auth KX], L [auth LX], M [auth MX], N [auth NX], O [auth OX], P [auth PX], Q [auth QX]	IPR010258	Conjugal transfer TrbG/VirB9/CagX	Family