6X66 | pdb_00006x66

Legionella pneumophila dDot T4SS OMC

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
MD [auth QA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
LD [auth LA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
KD [auth KA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
JD [auth JA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
ID [auth IA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
HD [auth HA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
GD [auth GA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
FD [auth FA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
ED [auth EA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
DD [auth DA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
CD [auth CA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
BD [auth BA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
AD [auth AA]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
ZA [auth GK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
XB [auth JK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
VC [auth MK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
T [auth CK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
RA [auth FK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
PB [auth IK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
NC [auth LK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
L [auth BK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
JA [auth EK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
HB [auth HK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
FC [auth KK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
D [auth AK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
BA [auth DK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
MD [auth QA]	OmpA	e6x66QA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
LD [auth LA]	OmpA	e6x66LA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
KD [auth KA]	OmpA	e6x66KA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
JD [auth JA]	OmpA	e6x66JA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
ID [auth IA]	OmpA	e6x66IA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
HD [auth HA]	OmpA	e6x66HA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
GD [auth GA]	OmpA	e6x66GA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
FD [auth FA]	OmpA	e6x66FA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
ED [auth EA]	OmpA	e6x66EA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
DD [auth DA]	OmpA	e6x66DA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
CD [auth CA]	OmpA	e6x66CA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
BD [auth BA]	OmpA	e6x66BA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
AD [auth AA]	OmpA	e6x66AA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
ZA [auth GK]	OmpA	e6x66GK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
XB [auth JK]	OmpA	e6x66JK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
VC [auth MK]	OmpA	e6x66MK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
T [auth CK]	OmpA	e6x66CK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
RA [auth FK]	OmpA	e6x66FK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
PB [auth IK]	OmpA	e6x66IK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
NC [auth LK]	OmpA	e6x66LK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
L [auth BK]	OmpA	e6x66BK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
JA [auth EK]	OmpA	e6x66EK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
HB [auth HK]	OmpA	e6x66HK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
FC [auth KK]	OmpA	e6x66KK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
D [auth AK]	OmpA	e6x66AK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
BA [auth DK]	OmpA	e6x66DK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AD [auth AA], BD [auth BA], CD [auth CA], DD [auth DA], ED [auth EA], AD [auth AA], BD [auth BA], CD [auth CA], DD [auth DA], ED [auth EA], FD [auth FA], GD [auth GA], HD [auth HA], ID [auth IA], JD [auth JA], KD [auth KA], LD [auth LA], MD [auth QA]	PF00691	OmpA family (OmpA)	OmpA family	-	Family
BA [auth DK], D [auth AK], FC [auth KK], HB [auth HK], JA [auth EK], BA [auth DK], D [auth AK], FC [auth KK], HB [auth HK], JA [auth EK], L [auth BK], NC [auth LK], PB [auth IK], RA [auth FK], T [auth CK], VC [auth MK], XB [auth JK], ZA [auth GK]	PF00691	OmpA family (OmpA)	OmpA family	-	Family
B [auth AD], BC [auth Jd], DB [auth Gd], DC [auth KD], FA [auth Dd], B [auth AD], BC [auth Jd], DB [auth Gd], DC [auth KD], FA [auth Dd], FB [auth HD], H [auth Ad], HA [auth ED], J [auth BD], JC [auth Kd], LB [auth Hd], LC [auth LD], NA [auth Ed], NB [auth ID], P [auth Bd], PA [auth FD], R [auth CD], RC [auth Ld], TB [auth Id], TC [auth MD], VA [auth Fd], VB [auth JD], X [auth Cd], XA [auth GD], Z [auth DD], ZC [auth Md]	PF16816	DotD protein (DotD)	DotD protein	The DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AD [auth AA], BD [auth BA], CD [auth CA], DD [auth DA], ED [auth EA], AD [auth AA], BD [auth BA], CD [auth CA], DD [auth DA], ED [auth EA], FD [auth FA], GD [auth GA], HD [auth HA], ID [auth IA], JD [auth JA], KD [auth KA], LD [auth LA], MD [auth QA]	Outer membrane protein, OmpA family protein	-	-	cellular anatomical structure membrane
AB [auth GX], AC [auth JZ], BB [auth GY], CA [auth DX], CB [auth GZ], AB [auth GX], AC [auth JZ], BB [auth GY], CA [auth DX], CB [auth GZ], DA [auth DY], E [auth AX], EA [auth DZ], F [auth AY], G [auth AZ], GC [auth KX], HC [auth KY], IB [auth HX], IC [auth KZ], JB [auth HY], KA [auth EX], KB [auth HZ], LA [auth EY], M [auth BX], MA [auth EZ], N [auth BY], O [auth BZ], OC [auth LX], PC [auth LY], QB [auth IX], QC [auth LZ], RB [auth IY], SA [auth FX], SB [auth IZ], TA [auth FY], U [auth CX], UA [auth FZ], V [auth CY], W [auth CZ], WC [auth MX], XC [auth MY], YB [auth JX], YC [auth MZ], ZB [auth JY]	Type IV secretion system unknown protein fragment	-	-	-
BA [auth DK], D [auth AK], FC [auth KK], HB [auth HK], JA [auth EK], BA [auth DK], D [auth AK], FC [auth KK], HB [auth HK], JA [auth EK], L [auth BK], NC [auth LK], PB [auth IK], RA [auth FK], T [auth CK], VC [auth MK], XB [auth JK], ZA [auth GK]	Inner membrane lipoprotein YiaD	-	-	cellular anatomical structure membrane
AA [auth DH], C [auth AH], EC [auth KH], GB [auth HH], IA [auth EH], AA [auth DH], C [auth AH], EC [auth KH], GB [auth HH], IA [auth EH], K [auth BH], MC [auth LH], OB [auth IH], QA [auth FH], S [auth CH], UC [auth MH], WB [auth JH], YA [auth GH]	Type IV secretion protein IcmK	-	-	-
B [auth AD], BC [auth Jd], DB [auth Gd], DC [auth KD], FA [auth Dd], B [auth AD], BC [auth Jd], DB [auth Gd], DC [auth KD], FA [auth Dd], FB [auth HD], H [auth Ad], HA [auth ED], J [auth BD], JC [auth Kd], LB [auth Hd], LC [auth LD], NA [auth Ed], NB [auth ID], P [auth Bd], PA [auth FD], R [auth CD], RC [auth Ld], TB [auth Id], TC [auth MD], VA [auth Fd], VB [auth JD], X [auth Cd], XA [auth GD], Z [auth DD], ZC [auth Md]	DotD	-	-	-
A [auth AC], CC [auth KC], EB [auth HC], GA [auth EC], I [auth BC], A [auth AC], CC [auth KC], EB [auth HC], GA [auth EC], I [auth BC], KC [auth LC], MB [auth IC], OA [auth FC], Q [auth CC], SC [auth MC], UB [auth JC], WA [auth GC], Y [auth DC]	DotC	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AD [auth AA], BD [auth BA], CD [auth CA], DD [auth DA], ED [auth EA], AD [auth AA], BD [auth BA], CD [auth CA], DD [auth DA], ED [auth EA], FD [auth FA], GD [auth GA], HD [auth HA], ID [auth IA], JD [auth JA], KD [auth KA], LD [auth LA], MD [auth QA]	IPR006665	OmpA-like domain	Domain
AD [auth AA], BD [auth BA], CD [auth CA], DD [auth DA], ED [auth EA], AD [auth AA], BD [auth BA], CD [auth CA], DD [auth DA], ED [auth EA], FD [auth FA], GD [auth GA], HD [auth HA], ID [auth IA], JD [auth JA], KD [auth KA], LD [auth LA], MD [auth QA]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
AD [auth AA], BD [auth BA], CD [auth CA], DD [auth DA], ED [auth EA], AD [auth AA], BD [auth BA], CD [auth CA], DD [auth DA], ED [auth EA], FD [auth FA], GD [auth GA], HD [auth HA], ID [auth IA], JD [auth JA], KD [auth KA], LD [auth LA], MD [auth QA]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
BA [auth DK], D [auth AK], FC [auth KK], HB [auth HK], JA [auth EK], BA [auth DK], D [auth AK], FC [auth KK], HB [auth HK], JA [auth EK], L [auth BK], NC [auth LK], PB [auth IK], RA [auth FK], T [auth CK], VC [auth MK], XB [auth JK], ZA [auth GK]	IPR006665	OmpA-like domain	Domain
BA [auth DK], D [auth AK], FC [auth KK], HB [auth HK], JA [auth EK], BA [auth DK], D [auth AK], FC [auth KK], HB [auth HK], JA [auth EK], L [auth BK], NC [auth LK], PB [auth IK], RA [auth FK], T [auth CK], VC [auth MK], XB [auth JK], ZA [auth GK]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
BA [auth DK], D [auth AK], FC [auth KK], HB [auth HK], JA [auth EK], BA [auth DK], D [auth AK], FC [auth KK], HB [auth HK], JA [auth EK], L [auth BK], NC [auth LK], PB [auth IK], RA [auth FK], T [auth CK], VC [auth MK], XB [auth JK], ZA [auth GK]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
B [auth AD], BC [auth Jd], DB [auth Gd], DC [auth KD], FA [auth Dd], B [auth AD], BC [auth Jd], DB [auth Gd], DC [auth KD], FA [auth Dd], FB [auth HD], H [auth Ad], HA [auth ED], J [auth BD], JC [auth Kd], LB [auth Hd], LC [auth LD], NA [auth Ed], NB [auth ID], P [auth Bd], PA [auth FD], R [auth CD], RC [auth Ld], TB [auth Id], TC [auth MD], VA [auth Fd], VB [auth JD], X [auth Cd], XA [auth GD], Z [auth DD], ZC [auth Md]	IPR038140	DotD superfamily	Homologous Superfamily
B [auth AD], BC [auth Jd], DB [auth Gd], DC [auth KD], FA [auth Dd], B [auth AD], BC [auth Jd], DB [auth Gd], DC [auth KD], FA [auth Dd], FB [auth HD], H [auth Ad], HA [auth ED], J [auth BD], JC [auth Kd], LB [auth Hd], LC [auth LD], NA [auth Ed], NB [auth ID], P [auth Bd], PA [auth FD], R [auth CD], RC [auth Ld], TB [auth Id], TC [auth MD], VA [auth Fd], VB [auth JD], X [auth Cd], XA [auth GD], Z [auth DD], ZC [auth Md]	IPR031817	DotD protein	Family
A [auth AC], CC [auth KC], EB [auth HC], GA [auth EC], I [auth BC], A [auth AC], CC [auth KC], EB [auth HC], GA [auth EC], I [auth BC], KC [auth LC], MB [auth IC], OA [auth FC], Q [auth CC], SC [auth MC], UB [auth JC], WA [auth GC], Y [auth DC]	IPR031618	Putative type IV secretory system protein	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth AC], AD [auth AA], B [auth AD], BA [auth DK], BC [auth Jd] A [auth AC], AD [auth AA], B [auth AD], BA [auth DK], BC [auth Jd], BD [auth BA], CC [auth KC], CD [auth CA], D [auth AK], DB [auth Gd], DC [auth KD], DD [auth DA], EB [auth HC], ED [auth EA], FA [auth Dd], FB [auth HD], FC [auth KK], FD [auth FA], GA [auth EC], GD [auth GA], H [auth Ad], HA [auth ED], HB [auth HK], HD [auth HA], I [auth BC], ID [auth IA], J [auth BD], JA [auth EK], JC [auth Kd], JD [auth JA], KC [auth LC], KD [auth KA], L [auth BK], LB [auth Hd], LC [auth LD], LD [auth LA], MB [auth IC], MD [auth QA], NA [auth Ed], NB [auth ID], NC [auth LK], OA [auth FC], P [auth Bd], PA [auth FD], PB [auth IK], Q [auth CC], R [auth CD], RA [auth FK], RC [auth Ld], SC [auth MC], T [auth CK], TB [auth Id], TC [auth MD], UB [auth JC], VA [auth Fd], VB [auth JD], VC [auth MK], WA [auth GC], X [auth Cd], XA [auth GD], XB [auth JK], Y [auth DC], Z [auth DD], ZA [auth GK], ZC [auth Md]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type IV Secretion Systems	Dot T4SS OMC type IV secretion system