6X65 | pdb_00006x65

Legionella pneumophila Dot/Icm T4SS

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ME [auth P]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
WE [auth Z]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
VE [auth Y]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
UE [auth X]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
TE [auth W]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
SE [auth V]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
RE [auth U]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
QE [auth T]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
PE [auth S]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
OE [auth R]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
NE [auth Q]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
LE [auth O]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
KE [auth N]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
ZC [auth IK]	SCOP2 Family	OmpA-like	8098175	4001470	SCOP2 (2022-06-29)
ZC [auth IK]	SCOP2 Superfamily	OmpA-like	8098176	3001650	SCOP2 (2022-06-29)
XD [auth LK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
VA [auth BK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
TB [auth EK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
RC [auth HK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
PD [auth KK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
NA [auth AK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
LB [auth DK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
JC [auth GK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
HD [auth JK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
FE [auth MK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
DB [auth CK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
BC [auth FK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ME [auth P]	OmpA	e6x65P1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
WE [auth Z]	OmpA	e6x65Z1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
VE [auth Y]	OmpA	e6x65Y1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
UE [auth X]	OmpA	e6x65X1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
TE [auth W]	OmpA	e6x65W1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
SE [auth V]	OmpA	e6x65V1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
RE [auth U]	OmpA	e6x65U1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
QE [auth T]	OmpA	e6x65T1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
PE [auth S]	OmpA	e6x65S1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
OE [auth R]	OmpA	e6x65R1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
NE [auth Q]	OmpA	e6x65Q1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
LE [auth O]	OmpA	e6x65O1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
KE [auth N]	OmpA	e6x65N1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
ZC [auth IK]	OmpA	e6x65IK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
XD [auth LK]	OmpA	e6x65LK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
VA [auth BK]	OmpA	e6x65BK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
TB [auth EK]	OmpA	e6x65EK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
RC [auth HK]	OmpA	e6x65HK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
PD [auth KK]	OmpA	e6x65KK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
NA [auth AK]	OmpA	e6x65AK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
LB [auth DK]	OmpA	e6x65DK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
JC [auth GK]	OmpA	e6x65GK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
HD [auth JK]	OmpA	e6x65JK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
FE [auth MK]	OmpA	e6x65MK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
DB [auth CK]	OmpA	e6x65CK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)
BC [auth FK]	OmpA	e6x65FK1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: OmpA-like (From Topology)	T: OmpA-like	F: OmpA	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
KE [auth N], LE [auth O], ME [auth P], NE [auth Q], OE [auth R], KE [auth N], LE [auth O], ME [auth P], NE [auth Q], OE [auth R], PE [auth S], QE [auth T], RE [auth U], SE [auth V], TE [auth W], UE [auth X], VE [auth Y], WE [auth Z]	PF00691	OmpA family (OmpA)	OmpA family	-	Family
BC [auth FK], DB [auth CK], FE [auth MK], HD [auth JK], JC [auth GK], BC [auth FK], DB [auth CK], FE [auth MK], HD [auth JK], JC [auth GK], LB [auth DK], NA [auth AK], PD [auth KK], RC [auth HK], TB [auth EK], VA [auth BK], XD [auth LK], ZC [auth IK]	PF00691	OmpA family (OmpA)	OmpA family	-	Family
BB [auth CD], BE [auth Ld], DD [auth Id], DE [auth MD], FC [auth Fd], BB [auth CD], BE [auth Ld], DD [auth Id], DE [auth MD], FC [auth Fd], FD [auth JD], HB [auth Cd], HC [auth GD], JB [auth DD], JE [auth Md], LA [auth AD], LD [auth Jd], NC [auth Gd], ND [auth KD], PB [auth Dd], PC [auth HD], RA [auth Ad], RB [auth ED], TA [auth BD], TD [auth Kd], VC [auth Hd], VD [auth LD], XB [auth Ed], XC [auth ID], ZA [auth Bd], ZB [auth FD]	PF16816	DotD protein (DotD)	DotD protein	The DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
KE [auth N], LE [auth O], ME [auth P], NE [auth Q], OE [auth R], KE [auth N], LE [auth O], ME [auth P], NE [auth Q], OE [auth R], PE [auth S], QE [auth T], RE [auth U], SE [auth V], TE [auth W], UE [auth X], VE [auth Y], WE [auth Z]	Outer membrane protein, OmpA family protein	-	-	cellular anatomical structure membrane
BC [auth FK], DB [auth CK], FE [auth MK], HD [auth JK], JC [auth GK], BC [auth FK], DB [auth CK], FE [auth MK], HD [auth JK], JC [auth GK], LB [auth DK], NA [auth AK], PD [auth KK], RC [auth HK], TB [auth EK], VA [auth BK], XD [auth LK], ZC [auth IK]	Inner membrane lipoprotein YiaD	-	-	cellular anatomical structure membrane
AC [auth FH], CB [auth CH], EE [auth MH], GD [auth JH], IC [auth GH], AC [auth FH], CB [auth CH], EE [auth MH], GD [auth JH], IC [auth GH], KB [auth DH], MA [auth AH], OD [auth KH], QC [auth HH], SB [auth EH], UA [auth BH], WD [auth LH], YC [auth IH]	Type IV secretion protein IcmK	-	-	-
BB [auth CD], BE [auth Ld], DD [auth Id], DE [auth MD], FC [auth Fd], BB [auth CD], BE [auth Ld], DD [auth Id], DE [auth MD], FC [auth Fd], FD [auth JD], HB [auth Cd], HC [auth GD], JB [auth DD], JE [auth Md], LA [auth AD], LD [auth Jd], NC [auth Gd], ND [auth KD], PB [auth Dd], PC [auth HD], RA [auth Ad], RB [auth ED], TA [auth BD], TD [auth Kd], VC [auth Hd], VD [auth LD], XB [auth Ed], XC [auth ID], ZA [auth Bd], ZB [auth FD]	DotD	-	-	-
AB [auth CC], CE [auth MC], ED [auth JC], GC, IB [auth DC], AB [auth CC], CE [auth MC], ED [auth JC], GC, IB [auth DC], KA [auth AC], MD [auth KC], OC [auth HC], QB [auth EC], SA [auth BC], UD [auth LC], WC [auth IC], YB [auth FC]	DotC	-	-	-
A [auth AV], AA [auth NV], AD [auth IX], AE [auth LZ], B [auth AW], A [auth AV], AA [auth NV], AD [auth IX], AE [auth LZ], B [auth AW], BA [auth NW], BD [auth IY], C [auth BV], CA [auth OV], CC [auth FX], CD [auth IZ], D [auth BW], DA [auth OW], DC [auth FY], E [auth CV], EA [auth PV], EB [auth CX], EC [auth FZ], F [auth CW], FA [auth PW], FB [auth CY], G [auth DV], GA [auth QV], GB [auth CZ], GE [auth MX], H [auth DW], HA [auth QW], HE [auth MY], I [auth EV], IA [auth RV], ID [auth JX], IE [auth MZ], J [auth EW], JA [auth RW], JD [auth JY], K [auth FV], KC [auth GX], KD [auth JZ], L [auth FW], LC [auth GY], M [auth GV], MB [auth DX], MC [auth GZ], N [auth GW], NB [auth DY], O [auth HV], OA [auth AX], OB [auth DZ], P [auth HW], PA [auth AY], Q [auth IV], QA [auth AZ], QD [auth KX], R [auth IW], RD [auth KY], S [auth JV], SC [auth HX], SD [auth KZ], T [auth JW], TC [auth HY], U [auth KV], UB [auth EX], UC [auth HZ], V [auth KW], VB [auth EY], W [auth LV], WA [auth BX], WB [auth EZ], X [auth LW], XA [auth BY], Y [auth MV], YA [auth BZ], YD [auth LX], Z [auth MW], ZD [auth LY]	Type IV secretion system unknown protein fragment	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
KE [auth N], LE [auth O], ME [auth P], NE [auth Q], OE [auth R], KE [auth N], LE [auth O], ME [auth P], NE [auth Q], OE [auth R], PE [auth S], QE [auth T], RE [auth U], SE [auth V], TE [auth W], UE [auth X], VE [auth Y], WE [auth Z]	IPR006665	OmpA-like domain	Domain
KE [auth N], LE [auth O], ME [auth P], NE [auth Q], OE [auth R], KE [auth N], LE [auth O], ME [auth P], NE [auth Q], OE [auth R], PE [auth S], QE [auth T], RE [auth U], SE [auth V], TE [auth W], UE [auth X], VE [auth Y], WE [auth Z]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
KE [auth N], LE [auth O], ME [auth P], NE [auth Q], OE [auth R], KE [auth N], LE [auth O], ME [auth P], NE [auth Q], OE [auth R], PE [auth S], QE [auth T], RE [auth U], SE [auth V], TE [auth W], UE [auth X], VE [auth Y], WE [auth Z]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
BC [auth FK], DB [auth CK], FE [auth MK], HD [auth JK], JC [auth GK], BC [auth FK], DB [auth CK], FE [auth MK], HD [auth JK], JC [auth GK], LB [auth DK], NA [auth AK], PD [auth KK], RC [auth HK], TB [auth EK], VA [auth BK], XD [auth LK], ZC [auth IK]	IPR006665	OmpA-like domain	Domain
BC [auth FK], DB [auth CK], FE [auth MK], HD [auth JK], JC [auth GK], BC [auth FK], DB [auth CK], FE [auth MK], HD [auth JK], JC [auth GK], LB [auth DK], NA [auth AK], PD [auth KK], RC [auth HK], TB [auth EK], VA [auth BK], XD [auth LK], ZC [auth IK]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
BC [auth FK], DB [auth CK], FE [auth MK], HD [auth JK], JC [auth GK], BC [auth FK], DB [auth CK], FE [auth MK], HD [auth JK], JC [auth GK], LB [auth DK], NA [auth AK], PD [auth KK], RC [auth HK], TB [auth EK], VA [auth BK], XD [auth LK], ZC [auth IK]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
BB [auth CD], BE [auth Ld], DD [auth Id], DE [auth MD], FC [auth Fd], BB [auth CD], BE [auth Ld], DD [auth Id], DE [auth MD], FC [auth Fd], FD [auth JD], HB [auth Cd], HC [auth GD], JB [auth DD], JE [auth Md], LA [auth AD], LD [auth Jd], NC [auth Gd], ND [auth KD], PB [auth Dd], PC [auth HD], RA [auth Ad], RB [auth ED], TA [auth BD], TD [auth Kd], VC [auth Hd], VD [auth LD], XB [auth Ed], XC [auth ID], ZA [auth Bd], ZB [auth FD]	IPR038140	DotD superfamily	Homologous Superfamily
BB [auth CD], BE [auth Ld], DD [auth Id], DE [auth MD], FC [auth Fd], BB [auth CD], BE [auth Ld], DD [auth Id], DE [auth MD], FC [auth Fd], FD [auth JD], HB [auth Cd], HC [auth GD], JB [auth DD], JE [auth Md], LA [auth AD], LD [auth Jd], NC [auth Gd], ND [auth KD], PB [auth Dd], PC [auth HD], RA [auth Ad], RB [auth ED], TA [auth BD], TD [auth Kd], VC [auth Hd], VD [auth LD], XB [auth Ed], XC [auth ID], ZA [auth Bd], ZB [auth FD]	IPR031817	DotD protein	Family
AB [auth CC], CE [auth MC], ED [auth JC], GC, IB [auth DC], AB [auth CC], CE [auth MC], ED [auth JC], GC, IB [auth DC], KA [auth AC], MD [auth KC], OC [auth HC], QB [auth EC], SA [auth BC], UD [auth LC], WC [auth IC], YB [auth FC]	IPR031618	Putative type IV secretory system protein	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
AB [auth CC], BB [auth CD], BC [auth FK], BE [auth Ld], CE [auth MC] AB [auth CC], BB [auth CD], BC [auth FK], BE [auth Ld], CE [auth MC], DB [auth CK], DD [auth Id], DE [auth MD], ED [auth JC], FC [auth Fd], FD [auth JD], FE [auth MK], GC, HB [auth Cd], HC [auth GD], HD [auth JK], IB [auth DC], JB [auth DD], JC [auth GK], JE [auth Md], KA [auth AC], KE [auth N], LA [auth AD], LB [auth DK], LD [auth Jd], LE [auth O], MD [auth KC], ME [auth P], NA [auth AK], NC [auth Gd], ND [auth KD], NE [auth Q], OC [auth HC], OE [auth R], PB [auth Dd], PC [auth HD], PD [auth KK], PE [auth S], QB [auth EC], QE [auth T], RA [auth Ad], RB [auth ED], RC [auth HK], RE [auth U], SA [auth BC], SE [auth V], TA [auth BD], TB [auth EK], TD [auth Kd], TE [auth W], UD [auth LC], UE [auth X], VA [auth BK], VC [auth Hd], VD [auth LD], VE [auth Y], WC [auth IC], WE [auth Z], XB [auth Ed], XC [auth ID], XD [auth LK], YB [auth FC], ZA [auth Bd], ZB [auth FD], ZC [auth IK]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type IV Secretion Systems	Dot T4SS OMC type IV secretion system