Annotations: 6WY6

Crystal structure of S. cerevisiae Atg8 in complex with Ede1 (1220-1247)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2B Superfamily	Ubiquitin-like	8068236	3000157	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Ubiquitin-like	8068236	3000157	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	Baculo_p26	e6wy6B1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Baculo_p26	ECOD (v295.2)
B [auth A]	Baculo_p26	e6wy6A1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: Baculo_p26	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A]	PF02991	Autophagy protein Atg8 ubiquitin like (ATG8)	Autophagy protein Atg8 ubiquitin like	Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [1]. Autophagy is generally known as a process involved in the degradation of ...	Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [1]. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	EH domain-containing and endocytosis protein 1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding ubiquitin binding ubiquitin-like protein binding protein-macromolecule adaptor activity molecular adaptor activity	regulation of cytokinesis regulation of biological process regulation of cellular process positive regulation of cell division regulation of cell cycle process biological regulation positive regulation of biological process cytokinesis positive regulation of cell cycle regulation of cell division positive regulation of cytokinesis positive regulation of cell cycle process cellular process cell division regulation of cytokinesis regulation of biological process regulation of cellular process positive regulation of cell division regulation of cell cycle process biological regulation positive regulation of biological process cytokinesis positive regulation of cell cycle regulation of cell division positive regulation of cytokinesis positive regulation of cell cycle process cellular process cell division cell cycle regulation of cell cycle positive regulation of cellular process cell cycle process regulation of localization localization regulation of protein localization macromolecule localization intracellular protein localization import into cell transport endocytosis establishment of localization cellular component organization actin cortical patch organization organelle organization actin cytoskeleton organization cortical actin cytoskeleton organization cortical cytoskeleton organization actin filament-based process cellular component organization or biogenesis cytoskeleton organization cellular response to stimulus cellular response to topologically incorrect protein response to stimulus signaling endoplasmic reticulum unfolded protein response cellular response to unfolded protein response to unfolded protein intracellular signal transduction cell communication cellular response to stress response to stress response to topologically incorrect protein signal transduction response to endoplasmic reticulum stress	cell cortex intracellular anatomical structure cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton cell periphery intracellular organelle endocytic patch cellular anatomical structure cytoskeleton organelle membraneless organelle cortical actin cytoskeleton actin cortical patch cell cortex intracellular anatomical structure cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton cell periphery intracellular organelle endocytic patch cellular anatomical structure cytoskeleton organelle membraneless organelle cortical actin cytoskeleton actin cortical patch cytoplasm cellular bud cellular bud tip site of polarized growth cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cellular bud neck
A [auth B], B [auth A]	Autophagy-related protein 8	phosphatidylethanolamine binding binding phospholipid binding lipid binding protein tag activity molecular tag activity	membrane organization cellular component organization membrane fusion cellular process cellular component organization or biogenesis cellular component disassembly catabolic process protein-containing complex organization macroautophagy autophagy protein-containing complex disassembly autophagosome maturation metabolic process process utilizing autophagic mechanism membrane organization cellular component organization membrane fusion cellular process cellular component organization or biogenesis cellular component disassembly catabolic process protein-containing complex organization macroautophagy autophagy protein-containing complex disassembly autophagosome maturation metabolic process process utilizing autophagic mechanism cellular response to stimulus response to nutrient levels cellular response to nitrogen levels response to stimulus cellular response to starvation cellular response to nutrient levels cellular response to stress cellular response to nitrogen starvation response to stress response to starvation regulation of biological process regulation of cellular process biological regulation regulation of catabolic process regulation of autophagy regulation of macroautophagy regulation of metabolic process autophagosome assembly organelle assembly vacuole organization autophagosome organization cellular component biogenesis organelle organization cellular component assembly piecemeal microautophagy of the nucleus microautophagy nucleophagy localization macromolecule localization protein-containing complex localization establishment of protein localization cellular localization transport protein targeting to vacuole involved in autophagy protein targeting establishment of protein localization to vacuole establishment of localization in cell intracellular protein localization protein targeting to vacuole intracellular transport protein localization to vacuole establishment of localization establishment of protein localization to organelle protein transport protein localization to organelle vacuolar transport intracellular protein transport endoplasmic reticulum to Golgi vesicle-mediated transport Golgi vesicle transport vesicle-mediated transport autophagy of mitochondrion cytoplasm to vacuole targeting by the Cvt pathway regulation of cellular component organization membrane invagination regulation of membrane invagination mitophagy lipid storage membraneless organelle assembly lipid droplet formation lipid droplet organization nutrient storage protein localization to phagophore assembly site reticulophagy	organelle membrane contact site cellular anatomical structure organelle vacuole-isolation membrane contact site membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope mitochondrial envelope cytoplasm organelle membrane contact site cellular anatomical structure organelle vacuole-isolation membrane contact site membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope mitochondrial envelope cytoplasm organelle membrane cytosol vacuolar membrane storage vacuole lytic vacuole vacuole fungal-type vacuole lytic vacuole membrane bounding membrane of organelle fungal-type vacuole membrane autophagosome autophagosome membrane lipid droplet membraneless organelle intracellular membraneless organelle intracellular vesicle Cvt vesicle membrane cytoplasmic vesicle membrane Cvt vesicle vesicle membrane cytoplasmic vesicle vesicle phagophore assembly site

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
C, D	IPR000261	EH domain	Domain
C, D	IPR009060	UBA-like superfamily	Homologous Superfamily
C, D	IPR002048	EF-hand domain	Domain
C, D	IPR011992	EF-hand domain pair	Homologous Superfamily
C, D	IPR015940	Ubiquitin-associated domain	Domain
A [auth B], B [auth A]	IPR004241	Autophagy protein Atg8 ubiquitin-like	Family
A [auth B], B [auth A]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily