6WXE | pdb_00006wxe

Cryo-EM reconstruction of VP5/VP8 assembly from rhesus rotavirus particles - Upright conformation

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth 3]	Rota_VP4_MID	e6wxe32	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (1.6)
C [auth 3]	VP4_helical	e6wxe31	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: VP4_helical	ECOD (1.6)
B [auth 2]	VP4_haemagglut	e6wxe21	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: VP4_haemagglut	ECOD (1.6)
B [auth 2]	Rota_VP4_MID	e6wxe23	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (1.6)
B [auth 2]	VP4_helical	e6wxe22	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: VP4_helical	ECOD (1.6)
A [auth 1]	VP4_haemagglut	e6wxe13	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: VP4_haemagglut	ECOD (1.6)
A [auth 1]	Rota_VP4_MID	e6wxe12	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: Rota_VP4_MID	ECOD (1.6)
A [auth 1]	VP4_helical	e6wxe11	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: VP4_helical	ECOD (1.6)
D [auth A]	Rota_Capsid_VP6_2nd	e6wxeA2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
D [auth A]	Rota_Capsid_VP6_1st	e6wxeA1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
G [auth D]	Rota_Capsid_VP6_2nd	e6wxeD2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
G [auth D]	Rota_Capsid_VP6_1st	e6wxeD1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
I [auth F]	Rota_Capsid_VP6_2nd	e6wxeF2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
I [auth F]	Rota_Capsid_VP6_1st	e6wxeF1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
J [auth G]	Rota_Capsid_VP6_2nd	e6wxeG2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
J [auth G]	Rota_Capsid_VP6_1st	e6wxeG1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
K [auth H]	Rota_Capsid_VP6_2nd	e6wxeH1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
K [auth H]	Rota_Capsid_VP6_1st	e6wxeH2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
L [auth I]	Rota_Capsid_VP6_2nd	e6wxeI2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
L [auth I]	Rota_Capsid_VP6_1st	e6wxeI1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
O [auth L]	Rota_Capsid_VP6_2nd	e6wxeL1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
O [auth L]	Rota_Capsid_VP6_1st	e6wxeL2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
P [auth M]	Rota_Capsid_VP6_2nd	e6wxeM2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
P [auth M]	Rota_Capsid_VP6_1st	e6wxeM1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
Q [auth N]	Rota_Capsid_VP6_2nd	e6wxeN2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
Q [auth N]	Rota_Capsid_VP6_1st	e6wxeN1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
R [auth O]	Rota_Capsid_VP6_2nd	e6wxeO2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
R [auth O]	Rota_Capsid_VP6_1st	e6wxeO1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
S [auth P]	Rota_Capsid_VP6_2nd	e6wxeP2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
S [auth P]	Rota_Capsid_VP6_1st	e6wxeP1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
T [auth Q]	Rota_Capsid_VP6_2nd	e6wxeQ1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
T [auth Q]	Rota_Capsid_VP6_1st	e6wxeQ2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
U [auth R]	Rota_Capsid_VP6_2nd	e6wxeR1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
U [auth R]	Rota_Capsid_VP6_1st	e6wxeR2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
N [auth K]	Rota_Capsid_VP6_2nd	e6wxeK1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
N [auth K]	Rota_Capsid_VP6_1st	e6wxeK2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
M [auth J]	Rota_Capsid_VP6_2nd	e6wxeJ2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
M [auth J]	Rota_Capsid_VP6_1st	e6wxeJ1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
H [auth E]	Rota_Capsid_VP6_2nd	e6wxeE2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
H [auth E]	Rota_Capsid_VP6_1st	e6wxeE1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
F [auth C]	Rota_Capsid_VP6_2nd	e6wxeC1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
F [auth C]	Rota_Capsid_VP6_1st	e6wxeC2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
E [auth B]	Rota_Capsid_VP6_2nd	e6wxeB2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
E [auth B]	Rota_Capsid_VP6_1st	e6wxeB1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
AA [auth f]	VP7_2nd	e6wxef1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
AA [auth f]	VP7_1st	e6wxef2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
BA [auth g]	VP7_2nd	e6wxeg2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
BA [auth g]	VP7_1st	e6wxeg1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
CA [auth h]	VP7_2nd	e6wxeh1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
CA [auth h]	VP7_1st	e6wxeh2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
DA [auth i]	VP7_2nd	e6wxei2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
DA [auth i]	VP7_1st	e6wxei1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
EA [auth j]	VP7_2nd	e6wxej1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
EA [auth j]	VP7_1st	e6wxej2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
FA [auth k]	VP7_2nd	e6wxek2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
FA [auth k]	VP7_1st	e6wxek1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
GA [auth l]	VP7_2nd	e6wxel2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
GA [auth l]	VP7_1st	e6wxel1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
IA [auth n]	VP7_2nd	e6wxen1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
IA [auth n]	VP7_1st	e6wxen2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
JA [auth o]	VP7_2nd	e6wxeo1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
JA [auth o]	VP7_1st	e6wxeo2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
KA [auth p]	VP7_2nd	e6wxep2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
KA [auth p]	VP7_1st	e6wxep1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
LA [auth q]	VP7_2nd	e6wxeq2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
LA [auth q]	VP7_1st	e6wxeq1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
MA [auth r]	VP7_2nd	e6wxer2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
MA [auth r]	VP7_1st	e6wxer1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
V [auth a]	VP7_2nd	e6wxea2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
V [auth a]	VP7_1st	e6wxea1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
Y [auth d]	VP7_2nd	e6wxed2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
Y [auth d]	VP7_1st	e6wxed1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
Z [auth e]	VP7_2nd	e6wxee1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
Z [auth e]	VP7_1st	e6wxee2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
X [auth c]	VP7_2nd	e6wxec1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
X [auth c]	VP7_1st	e6wxec2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
W [auth b]	VP7_2nd	e6wxeb1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
W [auth b]	VP7_1st	e6wxeb2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
HA [auth m]	VP7_2nd	e6wxem1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
HA [auth m]	VP7_1st	e6wxem2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 1], B [auth 2], C [auth 3]	PF00426	Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut)	Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain	This entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus.	Domain
A [auth 1], B [auth 2], C [auth 3]	PF17477	Rotavirus VP4 membrane interaction domain (Rota_VP4_MID)	Rotavirus VP4 membrane interaction domain	This entry represents the VP4 membrane interaction domain.	Domain
A [auth 1], B [auth 2], C [auth 3]	PF17478	Rotavirus VP4 helical domain (VP4_helical)	Rotavirus VP4 helical domain		Domain
D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], P [auth M], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R]	PF00980	Rotavirus major capsid protein VP6 (Rota_Capsid_VP6)	Rotavirus major capsid protein VP6	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1], B [auth 2], C [auth 3]	Outer capsid protein VP4	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane permeabilization of host organelle membrane involved in viral entry into host cell symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane permeabilization of host organelle membrane involved in viral entry into host cell symbiont entry into host cell symbiont entry into host disruption of anatomical structure in another organism	host cellular component host intracellular part host cytoskeleton cellular anatomical structure host cell part host intracellular region other organism part host intracellular organelle membrane host intracellular membrane-bounded organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell plasma membrane host cellular component host intracellular part host cytoskeleton cellular anatomical structure host cell part host intracellular region other organism part host intracellular organelle membrane host intracellular membrane-bounded organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell plasma membrane host cell membrane viral capsid icosahedral viral capsid virion component viral outer capsid host cell endoplasmic reticulum host cell rough endoplasmic reticulum
D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], P [auth M], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R]	Intermediate capsid protein VP6	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding host cell surface binding host cell surface receptor binding	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell	virion component viral membrane viral envelope viral capsid icosahedral viral capsid T=13 icosahedral viral capsid viral intermediate capsid
AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], FA [auth k], GA [auth l], HA [auth m], IA [auth n], JA [auth o], KA [auth p], LA [auth q], MA [auth r], V [auth a], W [auth b], X [auth c], Y [auth d], Z [auth e]	Outer capsid glycoprotein VP7	cation binding ion binding binding metal ion binding small molecule binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid virion component viral outer capsid T=13 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1], B [auth 2], C [auth 3]	IPR000416	Haemagglutinin outer capsid protein VP4, concanavalin-like domain	Domain
A [auth 1], B [auth 2], C [auth 3]	IPR035330	Rotavirus VP4, membrane interaction domain	Domain
A [auth 1], B [auth 2], C [auth 3]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3]	IPR035329	Rotavirus VP4 helical domain	Domain
A [auth 1], B [auth 2], C [auth 3]	IPR042546	Outer capsid protein VP4	Family
A [auth 1], B [auth 2], C [auth 3]	IPR038017	Rotavirus VP4, membrane interaction domain superfamily	Homologous Superfamily
D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], P [auth M], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R]	IPR001385	Rotavirus A/C, major capsid protein VP6	Family
D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], P [auth M], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R]	IPR008935	Virus capsid protein, alpha-helical	Homologous Superfamily
D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], P [auth M], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], FA [auth k], GA [auth l], HA [auth m], IA [auth n], JA [auth o], KA [auth p], LA [auth q], MA [auth r], V [auth a], W [auth b], X [auth c], Y [auth d], Z [auth e]	IPR042207	Glycoprotein VP7, domain 1	Homologous Superfamily
AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], FA [auth k], GA [auth l], HA [auth m], IA [auth n], JA [auth o], KA [auth p], LA [auth q], MA [auth r], V [auth a], W [auth b], X [auth c], Y [auth d], Z [auth e]	IPR001963	Glycoprotein VP7	Family
AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], FA [auth k], GA [auth l], HA [auth m], IA [auth n], JA [auth o], KA [auth p], LA [auth q], MA [auth r], V [auth a], W [auth b], X [auth c], Y [auth d], Z [auth e]	IPR042210	Glycoprotein VP7, domain 2	Homologous Superfamily