6WVG | pdb_00006wvg

human CD53

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	GFP-like	8096046	3000576	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GFP-like	8096046	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	GFP	e6wvgB1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
B	F_UNCLASSIFIED	e6wvgB3	A: few secondary structure elements	X: Tetraspanin extracellular domain (From Topology)	H: Tetraspanin extracellular domain (From Topology)	T: Tetraspanin extracellular domain	F: F_UNCLASSIFIED	ECOD (1.6)
B	Tetraspannin	e6wvgB2	A: few secondary structure elements	X: Tetraspanin transmembrane domain (From Topology)	H: Tetraspanin transmembrane domain (From Topology)	T: Tetraspanin transmembrane domain	F: Tetraspannin	ECOD (1.6)
A	GFP	e6wvgA1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
A	F_UNCLASSIFIED	e6wvgA3	A: few secondary structure elements	X: Tetraspanin extracellular domain (From Topology)	H: Tetraspanin extracellular domain (From Topology)	T: Tetraspanin extracellular domain	F: F_UNCLASSIFIED	ECOD (1.6)
A	Tetraspannin	e6wvgA2	A: few secondary structure elements	X: Tetraspanin transmembrane domain (From Topology)	H: Tetraspanin transmembrane domain (From Topology)	T: Tetraspanin transmembrane domain	F: Tetraspannin	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain
A, B	PF00335	Tetraspanin family (Tetraspanin)	Tetraspanin family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Green fluorescent protein, Leukocyte surface antigen CD53 chimera	protein-membrane adaptor activity protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein binding binding	positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization regulation of syncytium formation by plasma membrane fusion regulation of developmental process cellular developmental process positive regulation of biological process cell-cell fusion muscle cell differentiation myotube differentiation cellular component organization positive regulation of developmental process muscle structure development cell differentiation anatomical structure development positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization regulation of syncytium formation by plasma membrane fusion regulation of developmental process cellular developmental process positive regulation of biological process cell-cell fusion muscle cell differentiation myotube differentiation cellular component organization positive regulation of developmental process muscle structure development cell differentiation anatomical structure development cellular component organization or biogenesis syncytium formation positive regulation of myoblast fusion positive regulation of cellular process developmental process regulation of biological process myoblast fusion biological regulation regulation of myoblast fusion positive regulation of syncytium formation by plasma membrane fusion syncytium formation by plasma membrane fusion anatomical structure morphogenesis anatomical structure formation involved in morphogenesis cellular process striated muscle cell differentiation localization cellular localization receptor clustering macromolecule localization intracellular protein localization localization within membrane protein localization to membrane cellular response to stimulus response to stimulus signaling signal transduction cell communication bioluminescence metabolic process generation of precursor metabolites and energy	membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule membrane specific granule cell periphery immunological synapse plasma membrane cell-cell junction anchoring junction cell junction extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR008952	Tetraspanin, EC2 domain superfamily	Homologous Superfamily
A, B	IPR000301	Tetraspanin, animals	Family
A, B	IPR018503	Tetraspanin, conserved site	Conserved Site
A, B	IPR018499	Tetraspanin/Peripherin	Family
A, B	IPR000786	Green fluorescent protein, GFP	Family
A, B	IPR011584	Green fluorescent protein-related	Family
A, B	IPR009017	Green fluorescent protein	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P19397	Liver Cirrhosis, Experimental osteosarcoma pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma subependymal giant cell astrocytoma adrenal cortex carcinoma chronic kidney disease diabetes mellitus head and neck cancer invasive ductal breast carcinoma lung cancer medulloblastoma ovarian cancer periodontitis psoriasis Liver Cirrhosis, Experimental osteosarcoma pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma subependymal giant cell astrocytoma adrenal cortex carcinoma chronic kidney disease diabetes mellitus head and neck cancer invasive ductal breast carcinoma lung cancer medulloblastoma ovarian cancer periodontitis psoriasis ulcerative colitis astrocytic tumor cutaneous lupus erythematosus digestive system neuroendocrine neoplasm IgA glomerulonephritis lung carcinoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma Sjogren syndrome breast cancer dermatomyositis glioblastoma interstitial cystitis lung adenocarcinoma malignant glioma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Transmembrane	Alpha-helical polytopic	Tetraspanin	Tetraspanin

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Tetraspanins	CD53 full-length tetraspanin

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.