6WUB | pdb_00006wub

30S subunit (head) of 70S Ribosome Enterococcus faecalis MultiBody refinement

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth p]	SCOP2 Family	Ribosomal protein S16	8103427	4001077	SCOP2 (2022-06-29)
I [auth p]	SCOP2 Superfamily	Ribosomal protein S16	8103428	3000680	SCOP2 (2022-06-29)
H [auth o]	SCOP2 Family	30S Ribosomal protein S15 / 40S Ribosomal protein S13	8103423	4000767	SCOP2 (2022-06-29)
H [auth o]	SCOP2 Superfamily	S15/NS1 RNA-binding domain	8103424	3001284	SCOP2 (2022-06-29)
G [auth l]	SCOP2 Family	Cold shock DNA-binding domain-like	8103481	4001909	SCOP2 (2022-06-29)
G [auth l]	SCOP2 Superfamily	Nucleic acid-binding proteins	8103482	3000135	SCOP2 (2022-06-29)
F [auth k]	SCOP2 Family	Ribosomal protein L18p and S11	8103441	4000555	SCOP2 (2022-06-29)
F [auth k]	SCOP2 Superfamily	Translational machinery components	8103442	3000571	SCOP2 (2022-06-29)
E [auth h]	SCOP2 Family	Ribosomal protein S8	8103451	4002027	SCOP2 (2022-06-29)
E [auth h]	SCOP2 Superfamily	Ribosomal protein S8	8103452	3000709	SCOP2 (2022-06-29)
D [auth f]	SCOP2 Family	Ribosomal protein S6	8103483	4001337	SCOP2 (2022-06-29)
D [auth f]	SCOP2 Superfamily	Ribosomal protein S6	8103484	3001323	SCOP2 (2022-06-29)
B [auth d]	SCOP2 Family	Ribosomal protein S4	8103421	4001399	SCOP2 (2022-06-29)
B [auth d]	SCOP2 Superfamily	Alpha-L RNA-binding motif	8103422	3001473	SCOP2 (2022-06-29)
J [auth q]	SCOP2 Family	Cold shock DNA-binding domain-like	8103461	4001909	SCOP2 (2022-06-29)
J [auth q]	SCOP2 Superfamily	Nucleic acid-binding proteins	8103462	3000135	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth p]	Ribosomal_S16_1	e6wubp1	A: a+b two layers	X: Ribosomal protein S16 (From Topology)	H: Ribosomal protein S16 (From Topology)	T: Ribosomal protein S16	F: Ribosomal_S16_1	ECOD (1.6)
H [auth o]	Ribosomal_S15_1	e6wubo1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Ribosomal_S15_1	ECOD (1.6)
G [auth l]	Ribosom_S12_S23	e6wubl1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosom_S12_S23	ECOD (1.6)
F [auth k]	Ribosomal_S11	e6wubk1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Ribosomal_S11	ECOD (1.6)
E [auth h]	Ribosomal_S8_N	e6wubh2	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: Ribosomal_S8_N	ECOD (1.6)
E [auth h]	Ribosomal_S8_C	e6wubh1	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: Ribosomal_S8_C	ECOD (1.6)
D [auth f]	Ribosomal_S6	e6wubf1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S6 (From Topology)	T: Ribosomal protein S6	F: Ribosomal_S6	ECOD (1.6)
C [auth e]	Ribosomal_S5_C	e6wube1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: Ribosomal_S5_C	ECOD (1.6)
C [auth e]	Ribosomal_S5	e6wube2	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: Ribosomal_S5	ECOD (1.6)
B [auth d]	S4	e6wubd1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: S4	ECOD (1.6)
L [auth t]	Ribosomal_S20p	e6wubt1	A: alpha bundles	X: Spectrin repeat-like	H: Ribosomal protein S20 (From Topology)	T: Ribosomal protein S20	F: Ribosomal_S20p	ECOD (1.6)
K [auth r]	Ribosomal_S18	e6wubr1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Ribosomal_S18	ECOD (1.6)
J [auth q]	Ribosomal_S17_1	e6wubq1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosomal_S17_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth f]	3.30.70.60	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Ribosomal protein S6/Translation elongation factor EF1B	CATH (utative)
C [auth e]	3.30.160.20	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (utative)
B [auth d]	3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region	Chain A	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth p]	30S ribosomal protein S16	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
H [auth o]	30S ribosomal protein S15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
G [auth l]	30S ribosomal protein S12	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
F [auth k]	30S ribosomal protein S11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
E [auth h]	30S ribosomal protein S8	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
D [auth f]	30S ribosomal protein S6	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
C [auth e]	30S ribosomal protein S5	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
B [auth d]	30S ribosomal protein S4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
L [auth t]	30S ribosomal protein S20	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
K [auth r]	30S ribosomal protein S18	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
J [auth q]	30S ribosomal protein S17	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
A [auth a]	16S rRNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth p]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
I [auth p]	IPR000307	Small ribosomal subunit protein bS16	Family
H [auth o]	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
H [auth o]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
H [auth o]	IPR000589	Small ribosomal subunit protein uS15	Family
G [auth l]	IPR006032	Small ribosomal subunit protein uS12	Family
G [auth l]	IPR005679	Ribosomal protein uS12, bacteria	Family
G [auth l]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
F [auth k]	IPR001971	Small ribosomal subunit protein uS11	Family
F [auth k]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
F [auth k]	IPR019981	Small ribosomal subunit protein uS11, bacteria	Family
F [auth k]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
E [auth h]	IPR000630	Small ribosomal subunit protein uS8	Family
E [auth h]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
E [auth h]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
D [auth f]	IPR000529	Small ribosomal subunit protein bS6	Family
D [auth f]	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
D [auth f]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
D [auth f]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
C [auth e]	IPR005712	Small ribosomal subunit protein uS5, bacteria	Family
C [auth e]	IPR000851	Small ribosomal subunit protein uS5	Family
C [auth e]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
C [auth e]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
C [auth e]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
C [auth e]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
C [auth e]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
B [auth d]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
B [auth d]	IPR002942	RNA-binding S4 domain	Domain
B [auth d]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
B [auth d]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
B [auth d]	IPR022801	Small ribosomal subunit protein uS4	Family
B [auth d]	IPR005709	Small ribosomal subunit protein uS4, bacteria	Family
L [auth t]	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
L [auth t]	IPR002583	Small ribosomal subunit protein bS20	Family
K [auth r]	IPR001648	Small ribosomal subunit protein bS18	Family
K [auth r]	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
K [auth r]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
J [auth q]	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
J [auth q]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
J [auth q]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
J [auth q]	IPR000266	Small ribosomal subunit protein uS17	Family