6WPA | pdb_00006wpa

Structure of AvaR1 bound to DNA half-site

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth H]	Pro_isomerase	e6wpaH1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)
I [auth G]	Pro_isomerase	e6wpaG1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)
H [auth F]	Pro_isomerase	e6wpaF1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)
G [auth E]	Pro_isomerase	e6wpaE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)
F [auth D]	Pro_isomerase	e6wpaD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)
E [auth C]	Pro_isomerase	e6wpaC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)
B	Pro_isomerase	e6wpaB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)
A	Pro_isomerase	e6wpaA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pro_isomerase	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	PF00440	Bacterial regulatory proteins, tetR family (TetR_N)	Bacterial regulatory proteins, tetR family		Domain
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	PF21935	Tetracyclin repressor-like, C-terminal domain (TetR_C_45)	Tetracyclin repressor-like, C-terminal domain	This domain is found at the C-terminal end of CprB from Streptomyces coelicolor (Swiss:O66122) and similar bacterial transcriptional regulators. This region is the ligand-binding domain (LBD) [1,2]. It is often found associated with Pfam:PF00440.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth M], D [auth N]	PAL2-1-5'-GC	-	-	-
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	AvaR1	DNA binding binding nucleic acid binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR023772	DNA-binding HTH domain, TetR-type, conserved site	Conserved Site
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR047923	A-factor receptor protein-like	Family
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR054126	CprB tetracyclin repressor-like, C-terminal domain	Domain
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR001647	DNA-binding HTH domain, TetR-type	Domain
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR036271	Tetracyclin repressor-like, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.