The Vo region of human V-ATPase in state 1 (focused refinement)
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| K [auth Q] | d6wlwq_ | Membrane and cell surface proteins and peptides | V-type ATP synthase subunit C | V-type ATP synthase subunit C | automated matches | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| L [auth R] | Na_sulph_symp | e6wlwR01 | A: a/b three-layered sandwiches | X: Rossmann-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: Na_sulph_symp | ECOD (v294.1) |
| K [auth Q] | LRR_1,LRR_8 | e6wlwQ1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| J [auth 9] | LRR_1,LRR_8 | e6wlw91 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| I [auth 8] | LRR_1,LRR_8 | e6wlw81 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| H [auth 7] | LRR_1,LRR_8 | e6wlw71 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| G [auth 6] | LRR_1,LRR_8 | e6wlw61 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| F [auth 5] | LRR_1,LRR_8 | e6wlw51 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| E [auth 4] | LRR_1,LRR_8 | e6wlw41 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| D [auth 3] | LRR_1,LRR_8 | e6wlw31 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| C [auth 2] | LRR_1,LRR_8 | e6wlw21 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| B [auth 1] | LRR_1,LRR_8 | e6wlw11 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| A [auth 0] | Na_sulph_symp | e6wlw001 | A: a/b three-layered sandwiches | X: Rossmann-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: Na_sulph_symp | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| O [auth U] | PF05827 | V-type proton ATPase subunit S1, luminal domain (VAS1_LD) | V-type proton ATPase subunit S1, luminal domain | This entry represents the luminal domain (LD) found in eukaryotic V-type proton ATPase subunit S1 involved in V-ATPase V0 assembly, including Ac45 subunit (ATP6AP1) [1,2]. This domain folds as a globular beta-prism structure which is structurally sim ... | Domain |
| O [auth U] | PF20520 | V0 complex accessory subunit Ac45/VOA1 transmembrane domain (Ac45-VOA1_TM) | V0 complex accessory subunit Ac45/VOA1 transmembrane domain | This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) whic ... | Domain |
| M [auth S] | PF05493 | ATP synthase subunit H (ATP_synt_H) | ATP synthase subunit H | - | Family |
| K [auth Q] | PF01992 | ATP synthase (C/AC39) subunit (vATP-synt_AC39) | ATP synthase (C/AC39) subunit | - | Family |
| PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain | |
| A [auth 0] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Proton or Sodium translocating F-type, V-type and A-type ATPases | V-type and F-type ATPases |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Vacuolar ATPase (V-ATPase) | V-ATPase complete structure, state 1 with SidK and ADP |














