6WJV
Structure of the Saccharomyces cerevisiae polymerase epsilon holoenzyme
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth 4] | SCOP2 Family | TBP-associated factors TAFs | 8099093 | 4000797 | SCOP2 (2022-06-29) |
D [auth 4] | SCOP2 Superfamily | Core histone-like | 8099094 | 3001387 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth 2] | F_UNCLASSIFIED | e6wjv21 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth 2] | PF04042 | e6wjv22 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF04042 | ECOD (1.6) |
C [auth 3] | F_UNCLASSIFIED | e6wjv31 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth 4] | PF00808 | e6wjv41 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00808 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08490 | Domain of unknown function (DUF1744) (DUF1744) | Domain of unknown function (DUF1744) | This domain is found at the C-terminal of the epsilon catalytic subunit of DNA polymerase. It is found C terminal to Pfam:PF03104 and Pfam:PF00136. | Domain | |
PF00136 | DNA polymerase family B (DNA_pol_B) | DNA polymerase family B | - | Family | |
PF03104 | DNA polymerase family B, exonuclease domain (DNA_pol_B_exo1) | DNA polymerase family B, exonuclease domain | - | Family | |
B [auth 2] | PF04042 | DNA polymerase alpha/epsilon subunit B (DNA_pol_E_B) | DNA polymerase alpha/epsilon subunit B | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR006134 | DNA-directed DNA polymerase, family B, multifunctional domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR023211 | DNA polymerase, palm domain superfamily | Homologous Superfamily | |
IPR006172 | DNA-directed DNA polymerase, family B | Family | |
IPR029703 | DNA polymerase epsilon catalytic subunit | Family | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR013697 | DNA polymerase epsilon, catalytic subunit A, C-terminal | Domain | |
IPR006133 | DNA-directed DNA polymerase, family B, exonuclease domain | Domain | |
IPR042087 | DNA polymerase family B, thumb domain | Homologous Superfamily | |
B [auth 2] | IPR016266 | DNA polymerase epsilon, subunit B | Family |
B [auth 2] | IPR007185 | DNA polymerase alpha/delta/epsilon, subunit B | Domain |
C [auth 3] | IPR009072 | Histone-fold | Homologous Superfamily |
D [auth 4] | IPR009072 | Histone-fold | Homologous Superfamily |