6WBH | pdb_00006wbh

Crystal structure of mRECK(CC4) in fusion with engineered MBP at medium resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Type 2 solute binding protein-like	8058187	3000083	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UNK_F_TYPE	e6wbhA3	A: alpha arrays	X: DEATH domain	H: DEATH domain (From Topology)	T: DEATH domain	F: UNK_F_TYPE	ECOD (1.6)
A	SBP_bac_1_C	e6wbhA1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_1_C	ECOD (1.6)
A	SBP_bac_1_N_1	e6wbhA2	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II (From Topology)	H: Periplasmic binding protein-like II (From Topology)	T: Periplasmic binding protein-like II	F: SBP_bac_1_N_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family
A	PF23332	RECK-like, CC4 domain (CC4_RECK)	RECK-like, CC4 domain	This domain is found in Reversion-inducing cysteine-rich protein with Kazal motifs from Mus musculus (RECK) and similar proteins from animals. RECK play essential roles in signalling in the central nervous system vascular development, acting to enabl ...	This domain is found in Reversion-inducing cysteine-rich protein with Kazal motifs from Mus musculus (RECK) and similar proteins from animals. RECK play essential roles in signalling in the central nervous system vascular development, acting to enable brain endothelial cells to selectively respond to Wnt7 signals (WNT7A or WNT7B). This protein contains five tandem and highly divergent repeats with six cysteines each and characteristic spacing. These units are named 'CC domains'. This entry represents the fourth of these domains (CC4), which consists of four short alpha-helices stabilised by three disulfide bonds [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Maltodextrin-binding protein,Reversion-inducing cysteine-rich protein with Kazal motifs fusion	transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding molecular transducer activity coreceptor activity signaling receptor activity enzyme regulator activity molecular function inhibitor activity peptidase regulator activity transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding molecular transducer activity coreceptor activity signaling receptor activity enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity metalloendopeptidase inhibitor activity serine-type endopeptidase inhibitor activity protein binding Wnt-protein binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility locomotion localization transport carbohydrate transport oligosaccharide transport disaccharide transport establishment of localization maltose transport polysaccharide localization dextrin transport macromolecule localization maltodextrin transmembrane transport polysaccharide transport response to disaccharide response to oxygen-containing compound detection of maltose stimulus detection of stimulus response to carbohydrate detection of chemical stimulus detection of disaccharide stimulus response to maltose detection of carbohydrate stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication signal transduction Wnt signaling pathway developmental process multicellular organismal process regulation of multicellular organismal development regulation of developmental process blood vessel morphogenesis tube development angiogenesis vasculature development regulation of vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis regulation of angiogenesis anatomical structure formation involved in morphogenesis anatomical structure development regulation of multicellular organismal process regulation of anatomical structure morphogenesis blood vessel development system development limb development appendage development embryonic forelimb morphogenesis embryonic limb morphogenesis embryonic morphogenesis embryonic appendage morphogenesis embryo development forelimb morphogenesis appendage morphogenesis limb morphogenesis cellular developmental process establishment of blood-brain barrier regulation of establishment of blood-brain barrier cell development regulation of cell differentiation nervous system development regulation of cell development central nervous system development cell differentiation cellular component organization extracellular matrix organization cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization sprouting angiogenesis multi-multicellular organism process reproductive process female pregnancy embryo implantation multi-organism reproductive process regulation of cellular component organization regulation of extracellular matrix organization negative regulation of locomotion regulation of cell motility negative regulation of biological process regulation of locomotion negative regulation of cellular process regulation of cell migration negative regulation of cell motility negative regulation of cell migration cellular component disassembly negative regulation of extracellular matrix organization extracellular matrix disassembly negative regulation of cellular component organization negative regulation of extracellular matrix disassembly regulation of extracellular matrix disassembly positive regulation of cell communication positive regulation of signal transduction positive regulation of biological process positive regulation of response to stimulus positive regulation of Wnt signaling pathway positive regulation of cellular process positive regulation of canonical Wnt signaling pathway positive regulation of signaling blood vessel maturation developmental maturation anatomical structure maturation	ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex periplasmic space ATPase dependent transmembrane transport complex protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex transporter complex ATP-binding cassette (ABC) transporter complex cell periphery cellular anatomical structure transmembrane transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex periplasmic space outer membrane-bounded periplasmic space cell envelope Wnt signalosome side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR006061	Solute-binding family 1, conserved site	Conserved Site
A	IPR006060	Maltose/Cyclodextrin ABC transporter, substrate-binding protein	Family
A	IPR006059	Bacterial-type extracellular solute-binding protein	Family
A	IPR055134	RECK, EGF-like 2 domain	Domain
A	IPR056979	Reversion-inducing cysteine-rich protein with Kazal, frizzled-like domain	Domain
A	IPR036058	Kazal domain superfamily	Homologous Superfamily
A	IPR002350	Kazal domain	Domain
A	IPR056978	Reversion-inducing cysteine-rich protein with Kazal, CC4 domain	Domain
A	IPR039016	Reversion-inducing cysteine-rich protein with Kazal motifs	Family
A	IPR055110	Reversion-inducing cysteine-rich with Kazal motifs, N-terminal	Domain
A	IPR056977	Reversion-inducing cysteine-rich protein with Kazal, fibronectin type I module	Domain
A	IPR056976	Reversion-inducing cysteine-rich protein with Kazal, EGF-like 1 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.