6WAT | pdb_00006wat

complex structure of PHF1


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth BA]Pro_isomerasee6watBA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
D [auth BC]Pro_isomerasee6watBC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
DA [auth OC]Pro_isomerasee6watOC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
F [auth CC]Pro_isomerasee6watCC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
G [auth DA]Pro_isomerasee6watDA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
H [auth DC]Pro_isomerasee6watDC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
I [auth EA]Pro_isomerasee6watEA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
J [auth EC]Pro_isomerasee6watEC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
N [auth GC]Pro_isomerasee6watGC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
O [auth HA]Pro_isomerasee6watHA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
R [auth IC]Pro_isomerasee6watIC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
S [auth JA]Pro_isomerasee6watJA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
U [auth KA]Pro_isomerasee6watKA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
V [auth KC]Pro_isomerasee6watKC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
X [auth LC]Pro_isomerasee6watLC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
Y [auth MA]Pro_isomerasee6watMA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
Z [auth MC]Pro_isomerasee6watMC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
W [auth LA]Pro_isomerasee6watLA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
T [auth JC]Pro_isomerasee6watJC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
Q [auth IA]Pro_isomerasee6watIA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
P [auth HC]Pro_isomerasee6watHC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
M [auth GA]Pro_isomerasee6watGA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
L [auth FC]Pro_isomerasee6watFC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
K [auth FA]Pro_isomerasee6watFA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
E [auth CA]Pro_isomerasee6watCA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
CA [auth OA]Pro_isomerasee6watOA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
BA [auth NC]Pro_isomerasee6watNC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
B [auth AC]Pro_isomerasee6watAC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
AA [auth NA]Pro_isomerasee6watNA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
A [auth AA]Pro_isomerasee6watAA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF18104Jumonji domain-containing protein 2A Tudor domain (Tudor_2)Jumonji domain-containing protein 2A Tudor domainThis is the tudor domain found in histone demethylase Jumonji domain-containing protein 2A (JMJD2A). Structure and function analysis indicate that this domain can recognize equally well two unrelated histone peptides, H3K4me3 and H4K20me3, by means o ...This is the tudor domain found in histone demethylase Jumonji domain-containing protein 2A (JMJD2A). Structure and function analysis indicate that this domain can recognize equally well two unrelated histone peptides, H3K4me3 and H4K20me3, by means of two very different binding mechanisms [3]. JMJD2 also known as KDM4, is a conserved iron (II)-dependent jumonji-domain demethylase subfamily that is essential during development. Vertebrate KDM4A-C proteins contain a conserved double tudor domain (DTD) [6].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Histone H3.1t peptide
PHD finger protein 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR009072Histone-foldHomologous Superfamily
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR000164Histone H3/CENP-AFamily
IPR025894Polycomb-like MTF2 factor 2, C-terminal domainDomain
IPR001965Zinc finger, PHD-typeDomain
IPR002999Tudor domainDomain
IPR047010PHD finger protein 1, PHD finger 2Domain
IPR019787Zinc finger, PHD-fingerDomain
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
IPR019786Zinc finger, PHD-type, conserved siteConserved Site
IPR031202PHD finger protein 1, PHD finger 1Domain
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR047399PHD finger protein 1, Tudor domainDomain
IPR040477Lysine-specific demethylase 4-like, Tudor domainDomain