6WAT

complex structure of PHF1


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BA [auth NC]DUF4537e6watNC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
CA [auth OA]DUF4537e6watOA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
A [auth AA]DUF4537e6watAA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
AA [auth NA]DUF4537e6watNA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
B [auth AC]DUF4537e6watAC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
C [auth BA]DUF4537e6watBA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
D [auth BC]DUF4537e6watBC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
DA [auth OC]DUF4537e6watOC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
E [auth CA]DUF4537e6watCA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
F [auth CC]DUF4537e6watCC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
G [auth DA]DUF4537e6watDA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
H [auth DC]DUF4537e6watDC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
I [auth EA]DUF4537e6watEA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
J [auth EC]DUF4537e6watEC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
K [auth FA]DUF4537e6watFA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
L [auth FC]DUF4537e6watFC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
M [auth GA]DUF4537e6watGA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
N [auth GC]DUF4537e6watGC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
O [auth HA]DUF4537e6watHA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
P [auth HC]DUF4537e6watHC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
Q [auth IA]DUF4537e6watIA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
R [auth IC]DUF4537e6watIC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
S [auth JA]DUF4537e6watJA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
T [auth JC]DUF4537e6watJC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
U [auth KA]DUF4537e6watKA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
V [auth KC]DUF4537e6watKC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
W [auth LA]DUF4537e6watLA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
X [auth LC]DUF4537e6watLC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
Y [auth MA]DUF4537e6watMA1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)
Z [auth MC]DUF4537e6watMC1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF4537ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF18104Jumonji domain-containing protein 2A Tudor domain (Tudor_2)Jumonji domain-containing protein 2A Tudor domainThis is the tudor domain found in histone demethylase Jumonji domain-containing protein 2A (JMJD2A). Structure and function analysis indicate that this domain can recognize equally well two unrelated histone peptides, H3K4me3 and H4K20me3, by means o ...This is the tudor domain found in histone demethylase Jumonji domain-containing protein 2A (JMJD2A). Structure and function analysis indicate that this domain can recognize equally well two unrelated histone peptides, H3K4me3 and H4K20me3, by means of two very different binding mechanisms [3]. JMJD2 also known as KDM4, is a conserved iron (II)-dependent jumonji-domain demethylase subfamily that is essential during development. Vertebrate KDM4A-C proteins contain a conserved double tudor domain (DTD) [6].
Domain
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
PHD finger protein 1
Histone H3.1t peptide

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR025894Polycomb-like MTF2 factor 2, C-terminal domainDomain
IPR001965Zinc finger, PHD-typeDomain
IPR002999Tudor domainDomain
IPR047010PHD finger protein 1, PHD finger 2Domain
IPR019787Zinc finger, PHD-fingerDomain
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
IPR019786Zinc finger, PHD-type, conserved siteConserved Site
IPR031202PHD finger protein 1, PHD finger 1Domain
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR047399PHD finger protein 1, Tudor domainDomain
IPR040477Lysine-specific demethylase 4-like, Tudor domainDomain
IPR009072Histone-foldHomologous Superfamily
IPR007125Histone H2A/H2B/H3Domain
IPR000164Histone H3/CENP-AFamily