6W2T

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth M]	SCOP2B Superfamily	Ribosomal S17 N-terminal domain-like	8052708	3002138	SCOP2B (2022-06-29)
J [auth M]	SCOP2B Superfamily	Nucleic acid-binding proteins	8052707	3000135	SCOP2B (2022-06-29)
K [auth O]	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8052971	3001284	SCOP2B (2022-06-29)
K [auth O]	SCOP2B Superfamily	Homeodomain-like	8052970	3000001	SCOP2B (2022-06-29)
L [auth P]	SCOP2B Superfamily	Translational machinery components	8097832	3000571	SCOP2B (2022-06-29)
N [auth X]	SCOP2B Superfamily	Ribosomal protein S8	8079081	3000709	SCOP2B (2022-06-29)
Q [auth b]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8053150	3000068	SCOP2B (2022-06-29)
S [auth f]	SCOP2B Superfamily	Ribosomal protein S30e-like	8053455	3002190	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SIS domain/Ribosomal protein S2-like	8052792	3001397	SCOP2B (2022-06-29)
U [auth G]	SCOP2B Superfamily	Ribosomal protein S7	8066001	3000799	SCOP2B (2022-06-29)
V [auth L]	SCOP2B Superfamily	Winged helix DNA-binding domain	8055720	3000034	SCOP2B (2022-06-29)
W [auth N]	SCOP2B Superfamily	L30e-like	8063980	3001739	SCOP2B (2022-06-29)
Y [auth R]	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8082683	3000100	SCOP2B (2022-06-29)
AA [auth T]	SCOP2B Superfamily	S13-like H2TH domain	8101439	3000053	SCOP2B (2022-06-29)
BA [auth U]	SCOP2B Superfamily	Winged helix DNA-binding domain	8089322	3000034	SCOP2B (2022-06-29)
CA [auth V]	SCOP2B Superfamily	Ribosomal protein S10	8097814	3001336	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ribosomal S3Ae-like	8053216	3002166	SCOP2B (2022-06-29)
DA [auth i]	SCOP2B Superfamily	Winged helix DNA-binding domain	8090991	3000034	SCOP2B (2022-06-29)
EA [auth d]	SCOP2B Superfamily	Nucleic acid-binding proteins	8095265	3000135	SCOP2B (2022-06-29)
FA [auth e]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8052584	3000068	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	WD40 repeat-like	8097816	3001694	SCOP2B (2022-06-29)
IA [auth 3]	SCOP2B Superfamily	TPR-like	8091484	3001345	SCOP2B (2022-06-29)
IA [auth 3]	SCOP2B Superfamily	Winged helix DNA-binding domain	8091488	3000034	SCOP2B (2022-06-29)
JA [auth 4]	SCOP2B Superfamily	EIF3 subunit F C-terminal domain-like	8053239	3002167	SCOP2B (2022-06-29)
JA [auth 4]	SCOP2B Superfamily	JAB1/MPN domain-like	8053240	3001105	SCOP2B (2022-06-29)
OA [auth 2]	SCOP2B Superfamily	TPR-like	8093045	3001345	SCOP2B (2022-06-29)
OA [auth 2]	SCOP2B Superfamily	Winged helix DNA-binding domain	8093052	3000034	SCOP2B (2022-06-29)
PA [auth 9]	SCOP2B Superfamily	Restriction endonuclease-like	8103698	3000104	SCOP2B (2022-06-29)
QA [auth 5]	SCOP2B Superfamily	EIF3 subunit F C-terminal domain-like	8053287	3002167	SCOP2B (2022-06-29)
QA [auth 5]	SCOP2B Superfamily	JAB1/MPN domain-like	8053286	3001105	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Nucleic acid-binding proteins	8052746	3000135	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Alpha-L RNA-binding motif	8052745	3001473	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8052747	3000334	SCOP2B (2022-06-29)
H [auth J]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8053075	3000433	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth M]	Ribosomal_S17_1	e6w2tM1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosomal_S17_1	ECOD (1.6)
K [auth O]	Ribosomal_S13_N	e6w2tO1	A: alpha arrays	X: HTH	H: 40S ribosomal protein S13 N-terminal domain (From Topology)	T: 40S ribosomal protein S13 N-terminal domain	F: Ribosomal_S13_N	ECOD (1.6)
K [auth O]	Ribosomal_S15_2	e6w2tO2	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Ribosomal_S15_2	ECOD (1.6)
L [auth P]	Ribosomal_S11	e6w2tP1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Ribosomal_S11	ECOD (1.6)
M [auth W]	Ribosomal_S21e	e6w2tW1	A: a+b two layers	X: 40S ribosomal protein rpS21 (S21e) (From Topology)	H: 40S ribosomal protein rpS21 (S21e) (From Topology)	T: 40S ribosomal protein rpS21 (S21e)	F: Ribosomal_S21e	ECOD (1.6)
N [auth X]	Ribosomal_S8_N_1	e6w2tX2	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: Ribosomal_S8_N_1	ECOD (1.6)
N [auth X]	Ribosomal_S8_C_1	e6w2tX1	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: Ribosomal_S8_C_1	ECOD (1.6)
O [auth Y]	Ribosom_S12_S23	e6w2tY1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosom_S12_S23	ECOD (1.6)
P [auth Z]	Ribosomal_S24e	e6w2tZ1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: Ribosomal_S24e	ECOD (1.6)
Q [auth b]	Ribosomal_S26e	e6w2tb1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: Ribosomal_S26e	ECOD (1.6)
R [auth c]	Ribosomal_S27e	e6w2tc1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Ribosomal_S27e	ECOD (1.6)
S [auth f]	Ribosomal_S30	e6w2tf1	A: extended segments	X: 40S ribosomal protein S30 (S30e) (From Topology)	H: 40S ribosomal protein S30 (S30e) (From Topology)	T: 40S ribosomal protein S30 (S30e)	F: Ribosomal_S30	ECOD (1.6)
B	Ribosomal_S2_2	e6w2tB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Ribosomal protein S2/SIS domain (From Topology)	T: Ribosomal protein S2/SIS domain	F: Ribosomal_S2_2	ECOD (1.6)
T [auth E]	Ribosomal_S3_C	e6w2tE1	A: a+b two layers	X: T-fold	H: Ribosomal protein S3-C (From Topology)	T: Ribosomal protein S3-C	F: Ribosomal_S3_C	ECOD (1.6)
T [auth E]	KH_2_3	e6w2tE2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: KH-domains	T: Prokaryotic type KH domain (KH-domain type II)	F: KH_2_3	ECOD (1.6)
U [auth G]	Ribosomal_S7_1	e6w2tG1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: Ribosomal_S7_1	ECOD (1.6)
V [auth L]	S10_plectin	e6w2tL1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: S10_plectin	ECOD (1.6)
W [auth N]	Ribosomal_L7Ae	e6w2tN1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: Ribosomal_L7Ae	ECOD (1.6)
X [auth Q]	Ribosomal_S19	e6w2tQ1	A: a+b two layers	X: Ribosomal protein S19 (From Topology)	H: Ribosomal protein S19 (From Topology)	T: Ribosomal protein S19	F: Ribosomal_S19	ECOD (1.6)
Y [auth R]	Ribosomal_S9	e6w2tR1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: Ribosomal_S9	ECOD (1.6)
Z [auth S]	Ribosomal_S17e	e6w2tS1	A: alpha arrays	X: HTH	H: HTH	T: FF domain	F: Ribosomal_S17e	ECOD (1.6)
AA [auth T]	Ribosomal_S13	e6w2tT1	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: Ribosomal_S13	ECOD (1.6)
BA [auth U]	Ribosomal_S19e	e6w2tU1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Ribosomal_S19e	ECOD (1.6)
CA [auth V]	Ribosomal_S10_1	e6w2tV1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: Ribosomal_S10_1	ECOD (1.6)
C	Ribosomal_S3Ae_N	e6w2tC2	A: beta barrels	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain (From Topology)	T: 40S ribosomal protein S3A N-terminal domain	F: Ribosomal_S3Ae_N	ECOD (1.6)
C	Ribosomal_S3Ae_C	e6w2tC1	A: a+b two layers	X: T-fold	H: 40S ribosomal protein S3A C-terminal domain (From Topology)	T: 40S ribosomal protein S3A C-terminal domain	F: Ribosomal_S3Ae_C	ECOD (1.6)
DA [auth i]	Ribosomal_S25	e6w2ti1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Ribosomal_S25	ECOD (1.6)
EA [auth d]	Ribosomal_S28e	e6w2td1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosomal_S28e	ECOD (1.6)
FA [auth e]	Ribosomal_S14_2	e6w2te1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: Ribosomal_S14_2	ECOD (1.6)
GA [auth g]	Ribosomal_S27	e6w2tg1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Ribosomal_S27	ECOD (1.6)
HA [auth h]	DUF1899	e6w2th1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: DUF1899	ECOD (1.6)
IA [auth 3]	PCI	e6w2t32	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PCI	ECOD (1.6)
IA [auth 3]	eIF3_N	e6w2t33	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: eIF3_N	ECOD (1.6)
IA [auth 3]	KOG2758	e6w2t31	A: extended segments	X: 26S proteasome regulatory subunits C-terminal helices	H: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)	T: 26S proteasome regulatory subunit RPN7 C-terminal helix	F: KOG2758	ECOD (1.6)
JA [auth 4]	JAB_1	e6w2t41	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: JAB_1	ECOD (1.6)
JA [auth 4]	MitMem_reg	e6w2t42	A: extended segments	X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain	F: MitMem_reg	ECOD (1.6)
KA [auth 6]	CSN8_PSD8_EIF3K_C	e6w2t61	A: alpha arrays	X: HTH	H: HTH	T: winged	F: CSN8_PSD8_EIF3K_C	ECOD (1.6)
KA [auth 6]	SAC3_GANP_1st	e6w2t62	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: SAC3_GANP_1st	ECOD (1.6)
D	Ribosomal_S5_C_1	e6w2tD3	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: Ribosomal_S5_C_1	ECOD (1.6)
D	Ribosomal_S5_3	e6w2tD2	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: Ribosomal_S5_3	ECOD (1.6)
D	Ribosomal_S5_2	e6w2tD1	A: extended segments	X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)	H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)	T: N-terminal region in 40S ribosomal protein rpS2 (S5p)	F: Ribosomal_S5_2	ECOD (1.6)
OA [auth 2]	PCI	e6w2t22	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PCI	ECOD (1.6)
OA [auth 2]	eIF-3c_N	e6w2t21	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: eIF-3c_N	ECOD (1.6)
PA [auth 9]	eIF-3_zeta	e6w2t91	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: eIF-3_zeta	ECOD (1.6)
QA [auth 5]	JAB_1	e6w2t51	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: JAB_1	ECOD (1.6)
QA [auth 5]	KOG1560	e6w2t52	A: extended segments	X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain	F: KOG1560	ECOD (1.6)
E [auth F]	Ribosomal_S4e	e6w2tF1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosomal_S4e	ECOD (1.6)
E [auth F]	40S_S4_C	e6w2tF3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: 40S_S4_C	ECOD (1.6)
E [auth F]	RS4NT	e6w2tF2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: RS4NT	ECOD (1.6)
F [auth H]	Ribosomal_S6e	e6w2tH1	A: beta barrels	X: Ribosomal protein L25-like	H: Ribosomal protein L25-like (From Topology)	T: Ribosomal protein L25-like	F: Ribosomal_S6e	ECOD (1.6)
G [auth I]	Ribosomal_S7e_N	e6w2tI2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: 40S ribosomal protein S7-A (From Topology)	T: 40S ribosomal protein S7-A	F: Ribosomal_S7e_N	ECOD (1.6)
G [auth I]	Ribosomal_S7e_C_1	e6w2tI1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: 40S ribosomal protein S7-A (From Topology)	T: 40S ribosomal protein S7-A	F: Ribosomal_S7e_C_1	ECOD (1.6)
H [auth J]	Ribosomal_S8e	e6w2tJ1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: Ribosomal_S8e	ECOD (1.6)
I [auth K]	S4	e6w2tK1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: S4	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
J [auth M]	PF16205	Ribosomal_S17 N-terminal (Ribosomal_S17_N)	Ribosomal_S17 N-terminal	-	Family
J [auth M]	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17	-	Domain
K [auth O]	PF08069	Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)	Ribosomal S13/S15 N-terminal domain	This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].	Domain
K [auth O]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15	-	Domain
L [auth P]	PF00411	Ribosomal protein S11 (Ribosomal_S11)	Ribosomal protein S11	-	Family
N [auth X]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8	-	Domain
O [auth Y]	PF00164	Ribosomal protein S12/S23 (Ribosom_S12_S23)	Ribosomal protein S12/S23	-	Family
P [auth Z]	PF01282	Ribosomal protein S24e (Ribosomal_S24e)	Ribosomal protein S24e	-	Family
Q [auth b]	PF01283	Ribosomal protein S26e (Ribosomal_S26e)	Ribosomal protein S26e	-	Family
R [auth c]	PF01667	Ribosomal protein S27 (Ribosomal_S27e)	Ribosomal protein S27	-	Family
S [auth f]	PF04758	Ribosomal protein S30 (Ribosomal_S30)	Ribosomal protein S30	-	Family
B	PF00318	Ribosomal protein S2 (Ribosomal_S2)	Ribosomal protein S2	-	Family
B	PF16122	40S ribosomal protein SA C-terminus (40S_SA_C)	40S ribosomal protein SA C-terminus	-	Family
T [auth E]	PF07650	KH domain (KH_2)	KH domain	-	Domain
T [auth E]	PF00189	Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)	Ribosomal protein S3, C-terminal domain	This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.	Domain
U [auth G]	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
V [auth L]	PF03501	Plectin/S10 domain (S10_plectin)	Plectin/S10 domain	This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.	Domain
W [auth N]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
X [auth Q]	PF00203	Ribosomal protein S19 (Ribosomal_S19)	Ribosomal protein S19	-	Domain
Y [auth R]	PF00380	Ribosomal protein S9/S16 (Ribosomal_S9)	Ribosomal protein S9/S16	-	Family
Z [auth S]	PF00833	Ribosomal S17 (Ribosomal_S17e)	Ribosomal S17	-	Family
AA [auth T]	PF00416	Ribosomal protein S13/S18 (Ribosomal_S13)	Ribosomal protein S13/S18	-	Family
BA [auth U]	PF01090	Ribosomal protein S19e (Ribosomal_S19e)	Ribosomal protein S19e	-	Family
CA [auth V]	PF00338	Ribosomal protein S10p/S20e (Ribosomal_S10)	Ribosomal protein S10p/S20e	This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.	Domain
C	PF01015	Ribosomal S3Ae family (Ribosomal_S3Ae)	Ribosomal S3Ae family	-	Family
DA [auth i]	PF03297	S25 ribosomal protein (Ribosomal_S25)	S25 ribosomal protein	-	Family
EA [auth d]	PF01200	Ribosomal protein S28e (Ribosomal_S28e)	Ribosomal protein S28e	-	Family
FA [auth e]	PF00253	Ribosomal protein S14p/S29e (Ribosomal_S14)	Ribosomal protein S14p/S29e	-	Family
GA [auth g]	PF01599	Ribosomal protein S27a (Ribosomal_S27)	Ribosomal protein S27a	This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...	This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].	Domain
HA [auth h]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
IA [auth 3]	PF09440	eIF3 subunit 6 N terminal domain (eIF3_N)	eIF3 subunit 6 N terminal domain	This is the N terminal domain of subunit 6 translation initiation factor eIF3.	Domain
IA [auth 3]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
IA [auth 3]	PF21357	Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C)	Eukaryotic translation initiation factor 3 subunit E, C-terminal	Eukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1].	Domain
JA [auth 4]	PF13012	Maintenance of mitochondrial structure and function (MitMem_reg)	Maintenance of mitochondrial structure and function	-	Family
JA [auth 4]	PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	-	Family
KA [auth 6]	PF10075	CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)	CSN8/PSMD8/EIF3K family	-	Family
LA [auth 7]	PF10255	RNA polymerase I-associated factor PAF67 (Paf67)	RNA polymerase I-associated factor PAF67	-	Repeat
MA [auth 8]	PF18005	eIF3 subunit M, C-terminal helix (eIF3m_C_helix)	eIF3 subunit M, C-terminal helix	This is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1].	Domain
MA [auth 8]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
D	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain	-	Domain
D	PF00333	Ribosomal protein S5, N-terminal domain (Ribosomal_S5)	Ribosomal protein S5, N-terminal domain	-	Domain
NA [auth 1]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
OA [auth 2]	PF05470	Eukaryotic translation initiation factor 3 subunit 8 N-terminus (eIF-3c_N)	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	-	Repeat
OA [auth 2]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
PA [auth 9]	PF05091	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (eIF-3_zeta)	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)	-	Family
QA [auth 5]	PF19445	C-terminal region of eIF3h (eIF3h_C)	C-terminal region of eIF3h	-	Family
QA [auth 5]	PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	-	Family
E [auth F]	PF00900	Ribosomal family S4e (Ribosomal_S4e)	Ribosomal family S4e	-	Family
E [auth F]	PF16121	40S ribosomal protein S4 C-terminus (40S_S4_C)	40S ribosomal protein S4 C-terminus	-	Family
E [auth F]	PF08071	RS4NT (NUC023) domain (RS4NT)	RS4NT (NUC023) domain	This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].	Domain
E [auth F]	PF00467	KOW motif (KOW)	KOW motif	-	Family
F [auth H]	PF01092	Ribosomal protein S6e (Ribosomal_S6e)	Ribosomal protein S6e	-	Family
G [auth I]	PF01251	Ribosomal protein S7e (Ribosomal_S7e)	Ribosomal protein S7e	-	Family
H [auth J]	PF01201	Ribosomal protein S8e (Ribosomal_S8e)	Ribosomal protein S8e	-	Family
I [auth K]	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
I [auth K]	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth a]	18S rRNA	-	-	-
J [auth M]	uS17	-	-	-
K [auth O]	uS15	-	-	-
L [auth P]	uS11	-	-	-
M [auth W]	eS21	-	-	-
N [auth X]	uS8	-	-	-
O [auth Y]	uS12	-	-	-
P [auth Z]	eS24	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	ribosomal subunit intracellular organelle protein-containing complex intracellular anatomical structure organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
Q [auth b]	eS26	-	-	-
R [auth c]	eS27	-	-	-
S [auth f]	eS30	-	-	-
B	uS2	-	-	-
T [auth E]	uS3	-	-	-
U [auth G]	uS7	-	-	-
V [auth L]	eS10	-	-	-
W [auth N]	eS12	-	-	-
X [auth Q]	uS19	-	-	-
Y [auth R]	uS9	-	-	-
Z [auth S]	eS17	-	-	-
AA [auth T]	uS13	-	-	-
BA [auth U]	eS19	-	-	-
CA [auth V]	uS10	-	-	-
C	eS1	-	-	-
DA [auth i]	eS25	-	-	-
EA [auth d]	eS28	-	-	-
FA [auth e]	eS29	-	-	-
GA [auth g]	eS31	-	-	-
HA [auth h]	RACK1	-	-	-
IA [auth 3]	Eukaryotic translation initiation factor 3 subunit E	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding	regulation of cellular process cellular biosynthetic process positive regulation of protein metabolic process organonitrogen compound biosynthetic process positive regulation of biological process positive regulation of translation positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process organic substance metabolic process positive regulation of biosynthetic process organic substance biosynthetic process regulation of cellular process cellular biosynthetic process positive regulation of protein metabolic process organonitrogen compound biosynthetic process positive regulation of biological process positive regulation of translation positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process organic substance metabolic process positive regulation of biosynthetic process organic substance biosynthetic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process cellular metabolic process regulation of protein metabolic process biological regulation regulation of cellular metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process positive regulation of cellular biosynthetic process catabolic process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay negative regulation of biological process RNA metabolic process negative regulation of cellular metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process negative regulation of cellular process RNA catabolic process negative regulation of macromolecule metabolic process mRNA catabolic process nuclear-transcribed mRNA catabolic process negative regulation of metabolic process mRNA metabolic process negative regulation of cellular biosynthetic process nucleic acid metabolic process organic cyclic compound catabolic process nucleobase-containing compound catabolic process organic cyclic compound metabolic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process organic substance catabolic process ribonucleoprotein complex biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly translational initiation cellular component organization or biogenesis protein-containing complex organization formation of cytoplasmic translation initiation complex cytoplasmic translation cytoplasmic translational initiation	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity cytosol postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization organelle synapse protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity cytosol postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization organelle synapse cell junction asymmetric synapse eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3e membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle nucleoplasm organelle lumen PML body nuclear lumen
JA [auth 4]	Eukaryotic translation initiation factor 3 subunit F	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity protein binding translation initiation factor binding identical protein binding metal-dependent deubiquitinase activity metallopeptidase activity	viral gene expression viral process viral translation IRES-dependent viral translational initiation ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly viral gene expression viral process viral translation IRES-dependent viral translational initiation ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity synapse cell junction eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3m
KA [auth 6]	Eukaryotic translation initiation factor 3 subunit K	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding RNA binding	regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression organic substance metabolic process organic substance biosynthetic process translational initiation protein metabolic process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process regulation of translational initiation cellular metabolic process regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression organic substance metabolic process organic substance biosynthetic process translational initiation protein metabolic process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process regulation of translational initiation cellular metabolic process regulation of protein metabolic process biological regulation regulation of cellular metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process ribonucleoprotein complex biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis protein-containing complex organization formation of cytoplasmic translation initiation complex cytoplasmic translation cytoplasmic translational initiation	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
LA [auth 7]	Eukaryotic translation initiation factor 3 subunit L	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding	viral gene expression viral process viral translational termination-reinitiation viral translation ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly viral gene expression viral process viral translational termination-reinitiation viral translation ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen cellular anatomical entity intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen fibrillar center organelle intracellular non-membrane-bounded organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen cellular anatomical entity intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen fibrillar center organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle protein-containing complex translation preinitiation complex eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm eukaryotic 48S preinitiation complex nucleoplasm eukaryotic translation initiation factor 3 complex synapse cell junction
MA [auth 8]	Eukaryotic translation initiation factor 3 subunit M	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding	ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3m
D	uS5	-	-	-
NA [auth 1]	Eukaryotic translation initiation factor 3 subunit A	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding RNA binding	viral gene expression viral process viral translation IRES-dependent viral translational initiation viral translational termination-reinitiation ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process viral gene expression viral process viral translation IRES-dependent viral translational initiation viral translational termination-reinitiation ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle protein-containing complex translation preinitiation complex eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cytosol postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization synapse cell junction asymmetric synapse eukaryotic 48S preinitiation complex nucleoplasm eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3m
OA [auth 2]	Eukaryotic translation initiation factor 3 subunit C	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding protein binding translation initiation factor binding RNA binding	ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic translation initiation factor 3 complex, eIF3m
PA [auth 9]	Eukaryotic translation initiation factor 3 subunit D	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding RNA binding mRNA cap binding RNA cap binding mRNA binding	ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process cap-dependent translational initiation	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex
QA [auth 5]	Eukaryotic translation initiation factor 3 subunit H	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity	ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process organonitrogen compound biosynthetic process protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process translational initiation cellular component organization or biogenesis protein metabolic process organonitrogen compound metabolic process protein-containing complex organization formation of cytoplasmic translation initiation complex cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation cellular process cytoplasmic translational initiation metabolic process macromolecule metabolic process	protein-containing complex translation preinitiation complex intracellular anatomical structure eukaryotic 43S preinitiation complex ribonucleoprotein complex cytoplasm cellular anatomical entity eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex
RA [auth A]	CrPV 5'-UTR IRES	-	-	-
E [auth F]	eS4	-	-	-
F [auth H]	eS6	-	-	-
G [auth I]	eS7	-	-	-
H [auth J]	eS8	-	-	-
I [auth K]	uS4	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
P [auth Z]	IPR001976	Small ribosomal subunit protein eS24	Family
P [auth Z]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
P [auth Z]	IPR018098	Small ribosomal subunit protein eS24 conserved site	Conserved Site
V [auth L]	IPR037447	Small ribosomal subunit protein eS10	Family
V [auth L]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
V [auth L]	IPR005326	Plectin/eS10, N-terminal	Domain
IA [auth 3]	IPR016650	Eukaryotic translation initiation factor 3 subunit E	Family
IA [auth 3]	IPR019010	Eukaryotic translation initiation factor 3 subunit E, N-terminal	Domain
IA [auth 3]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
IA [auth 3]	IPR000717	Proteasome component (PCI) domain	Domain
JA [auth 4]	IPR027531	Eukaryotic translation initiation factor 3 subunit F	Family
JA [auth 4]	IPR024969	EIF3F/CSN6-like, C-terminal	Domain
JA [auth 4]	IPR037518	MPN domain	Domain
JA [auth 4]	IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	Domain
KA [auth 6]	IPR016024	Armadillo-type fold	Homologous Superfamily
KA [auth 6]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
KA [auth 6]	IPR033464	CSN8/PSMD8/EIF3K	Domain
KA [auth 6]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
KA [auth 6]	IPR016020	Translation initiation factor 3, subunit 12, N-terminal, eukaryotic	Homologous Superfamily
KA [auth 6]	IPR000717	Proteasome component (PCI) domain	Domain
KA [auth 6]	IPR009374	Eukaryotic translation initiation factor 3 subunit K	Family
LA [auth 7]	IPR000717	Proteasome component (PCI) domain	Domain
LA [auth 7]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
LA [auth 7]	IPR019382	Translation initiation factor 3 complex subunit L	Family
MA [auth 8]	IPR045237	Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7	Family
MA [auth 8]	IPR000717	Proteasome component (PCI) domain	Domain
MA [auth 8]	IPR016024	Armadillo-type fold	Homologous Superfamily
MA [auth 8]	IPR040750	eIF3 subunit M, C-terminal helix domain	Domain
MA [auth 8]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
MA [auth 8]	IPR027528	Eukaryotic translation initiation factor 3 subunit M	Family
NA [auth 1]	IPR027512	Eukaryotic translation initiation factor 3 subunit A	Family
NA [auth 1]	IPR000717	Proteasome component (PCI) domain	Domain
OA [auth 2]	IPR027516	Eukaryotic translation initiation factor 3 subunit C	Family
OA [auth 2]	IPR000717	Proteasome component (PCI) domain	Domain
OA [auth 2]	IPR008905	Eukaryotic translation initiation factor 3 subunit C, N-terminal domain	Domain
OA [auth 2]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
OA [auth 2]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
PA [auth 9]	IPR007783	Eukaryotic translation initiation factor 3 subunit D	Family
QA [auth 5]	IPR037518	MPN domain	Domain
QA [auth 5]	IPR027524	Eukaryotic translation initiation factor 3 subunit H	Family
QA [auth 5]	IPR045810	eIF3h, C-terminal	Domain
QA [auth 5]	IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	Domain