6W2S | pdb_00006w2s

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth J]SCOP2B Superfamily50S Ribosomal protein L14-like 8053075 3000433 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyAlpha-L RNA-binding motif 8052745 3001473 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052747 3000334 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyNucleic acid-binding proteins 8052746 3000135 SCOP2B (2022-06-29)
NA [auth 5]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like 8053287 3002167 SCOP2B (2022-06-29)
NA [auth 5]SCOP2B SuperfamilyJAB1/MPN domain-like 8053286 3001105 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyRibosomal S3Ae-like 8053216 3002166 SCOP2B (2022-06-29)
MA [auth 4]SCOP2B SuperfamilyJAB1/MPN domain-like 8053240 3001105 SCOP2B (2022-06-29)
MA [auth 4]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like 8053239 3002167 SCOP2B (2022-06-29)
LA [auth 3]SCOP2B SuperfamilyWinged helix DNA-binding domain 8091488 3000034 SCOP2B (2022-06-29)
LA [auth 3]SCOP2B SuperfamilyTPR-like 8091484 3001345 SCOP2B (2022-06-29)
KA [auth 2]SCOP2B SuperfamilyTPR-like 8093045 3001345 SCOP2B (2022-06-29)
KA [auth 2]SCOP2B SuperfamilyWinged helix DNA-binding domain 8093052 3000034 SCOP2B (2022-06-29)
GA [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052584 3000068 SCOP2B (2022-06-29)
FA [auth d]SCOP2B SuperfamilyNucleic acid-binding proteins 8095265 3000135 SCOP2B (2022-06-29)
EA [auth a]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090991 3000034 SCOP2B (2022-06-29)
DA [auth V]SCOP2B SuperfamilyRibosomal protein S10 8097814 3001336 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8097826 3001397 SCOP2B (2022-06-29)
CA [auth U]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089322 3000034 SCOP2B (2022-06-29)
BA [auth T]SCOP2B SuperfamilyS13-like H2TH domain 8101439 3000053 SCOP2B (2022-06-29)
Z [auth R]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082683 3000100 SCOP2B (2022-06-29)
X [auth N]SCOP2B SuperfamilyL30e-like 8063980 3001739 SCOP2B (2022-06-29)
W [auth L]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055720 3000034 SCOP2B (2022-06-29)
V [auth G]SCOP2B SuperfamilyRibosomal protein S7 8066001 3000799 SCOP2B (2022-06-29)
T [auth f]SCOP2B SuperfamilyRibosomal protein S30e-like 8053455 3002190 SCOP2B (2022-06-29)
R [auth b]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053150 3000068 SCOP2B (2022-06-29)
O [auth X]SCOP2B SuperfamilyRibosomal protein S8 8079081 3000709 SCOP2B (2022-06-29)
M [auth P]SCOP2B SuperfamilyTranslational machinery components 8097824 3000571 SCOP2B (2022-06-29)
L [auth O]SCOP2B SuperfamilyHomeodomain-like 8052970 3000001 SCOP2B (2022-06-29)
L [auth O]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052971 3001284 SCOP2B (2022-06-29)
K [auth M]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052708 3002138 SCOP2B (2022-06-29)
K [auth M]SCOP2B SuperfamilyNucleic acid-binding proteins 8052707 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth J]G-alphae6w2sJ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
H [auth I]G-alphae6w2sI1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
G [auth H]G-alphae6w2sH1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
FG-alphae6w2sF1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
E [auth D]G-alphae6w2sD1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
PA [auth 7]Cas9_ae6w2s701 A: a/b three-layered sandwichesX: Rossmann-likeH: all-alpha NTP pyrophosphatasesT: Hypothetical protein AF_0060F: Cas9_aECOD (v294.1)
OA [auth 6]G-alphae6w2s61 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
NA [auth 5]G-alphae6w2s51 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
D [auth C]G-alphae6w2sC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
MA [auth 4]G-alphae6w2s41 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
LA [auth 3]Ribosomal_L30e6w2s31 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L30ECOD (v294.1)
KA [auth 2]Ribosomal_L30e6w2s21 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L30ECOD (v294.1)
IA [auth h]G-alphae6w2sh1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
HA [auth g]G-alphae6w2sg1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
GA [auth e]G-alphae6w2se1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
FA [auth d]G-alphae6w2sd1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
EA [auth a]G-alphae6w2sa1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
DA [auth V]G-alphae6w2sV1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
C [auth B]G-alphae6w2sB1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
CA [auth U]G-alphae6w2sU1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
BA [auth T]G-alphae6w2sT1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
AA [auth S]G-alphae6w2sS1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
Z [auth R]G-alphae6w2sR1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
Y [auth Q]G-alphae6w2sQ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
X [auth N]G-alphae6w2sN1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
W [auth L]G-alphae6w2sL1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
V [auth G]G-alphae6w2sG1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
U [auth E]G-alphae6w2sE1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
T [auth f]G-alphae6w2sf1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
S [auth c]G-alphae6w2sc1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
R [auth b]G-alphae6w2sb1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
Q [auth Z]G-alphae6w2sZ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
P [auth Y]G-alphae6w2sY1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
O [auth X]G-alphae6w2sX1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
N [auth W]G-alphae6w2sW1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
M [auth P]G-alphae6w2sP1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
L [auth O]G-alphae6w2sO1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
K [auth M]G-alphae6w2sM1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)
J [auth K]G-alphae6w2sK1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth J]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
H [auth I]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
G [auth H]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
G [auth H]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
PF00467KOW motif (KOW)KOW motif- Family
E [auth D]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
E [auth D]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
QA [auth 8]PF18005eIF3 subunit M, C-terminal helix (eIF3m_C_helix)eIF3 subunit M, C-terminal helixThis is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1]. Domain
QA [auth 8]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
OA [auth 6]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
NA [auth 5]PF19445C-terminal region of eIF3h (eIF3h_C)C-terminal region of eIF3h- Family
NA [auth 5]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin proteaseProteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or J ...Proteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or JAMM domain [7]. These are metalloenzymes that function as the ubiquitin isopeptidase/ deubiquitinase in the ubiquitin-based signalling and protein turnover pathways in eukaryotes [7]. Versions of the domain in prokaryotic cognates of the ubiquitin-modification pathway are shown to have a similar role, and the archaeal protein from Haloferax volcanii is found to cleave ubiquitin-like small archaeal modifier proteins (SAMP1/2) from protein conjugates [8,9].
Domain
D [auth C]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
MA [auth 4]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
MA [auth 4]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin proteaseProteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or J ...Proteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or JAMM domain [7]. These are metalloenzymes that function as the ubiquitin isopeptidase/ deubiquitinase in the ubiquitin-based signalling and protein turnover pathways in eukaryotes [7]. Versions of the domain in prokaryotic cognates of the ubiquitin-modification pathway are shown to have a similar role, and the archaeal protein from Haloferax volcanii is found to cleave ubiquitin-like small archaeal modifier proteins (SAMP1/2) from protein conjugates [8,9].
Domain
LA [auth 3]PF09440eIF3 subunit 6 N terminal domain (eIF3_N)eIF3 subunit 6 N terminal domainThis is the N terminal domain of subunit 6 translation initiation factor eIF3. Domain
LA [auth 3]PF21357Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C)Eukaryotic translation initiation factor 3 subunit E, C-terminalEukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1]. Domain
LA [auth 3]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
KA [auth 2]PF26569EIF3CL-like, C-terminal domain (EIF3CL_C)EIF3CL-like, C-terminal domainThis domain is found at the C-terminal end of human Eukaryotic translation initiation factor 3 subunit C-like protein (EIF3CL) and similar proteins. EIF3CL is a component of the eukaryotic translation initiation factor 3 (eIF-3) complex. This domain ...This domain is found at the C-terminal end of human Eukaryotic translation initiation factor 3 subunit C-like protein (EIF3CL) and similar proteins. EIF3CL is a component of the eukaryotic translation initiation factor 3 (eIF-3) complex. This domain is predicted to adopt an alpha-helical configuration.
Domain
KA [auth 2]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
JA [auth 1]PF22591eIF3a, PCI domain, TPR-like region (eIF3a_PCI_TPR-like)eIF3a, PCI domain, TPR-like region- Repeat
JA [auth 1]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
DA [auth V]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
C [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
C [auth B]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
CA [auth U]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
BA [auth T]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
Z [auth R]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
Y [auth Q]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
X [auth N]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
W [auth L]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain
V [auth G]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
V [auth G]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
U [auth E]PF07650KH domain (KH_2)KH domainDomain
U [auth E]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
U [auth E]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
Q [auth Z]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
P [auth Y]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
O [auth X]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
M [auth P]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
L [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
K [auth M]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
K [auth M]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
J [auth K]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
J [auth K]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth J]eS8
H [auth I]eS7
G [auth H]eS6
eS4
E [auth D]uS5
QA [auth 8]Eukaryotic translation initiation factor 3 subunit M
PA [auth 7]Eukaryotic translation initiation factor 3 subunit L
OA [auth 6]Eukaryotic translation initiation factor 3 subunit K
NA [auth 5]Eukaryotic translation initiation factor 3 subunit H
D [auth C]eS1
MA [auth 4]Eukaryotic translation initiation factor 3 subunit F
LA [auth 3]Eukaryotic translation initiation factor 3 subunit E
KA [auth 2]Eukaryotic translation initiation factor 3 subunit C
JA [auth 1]Eukaryotic translation initiation factor 3 subunit A
IA [auth h]RACK1
HA [auth g]eS31
GA [auth e]eS29
FA [auth d]eS28
EA [auth a]eS25
DA [auth V]uS10
C [auth B]uS2
CA [auth U]eS19
BA [auth T]uS13
AA [auth S]eS17
Z [auth R]uS9
Y [auth Q]uS19
X [auth N]eS12
W [auth L]eS10 -
V [auth G]uS7
U [auth E]uS3
T [auth f]eS30
B [auth 0]CrPV 5'-UTR IRES---
S [auth c]eS27
R [auth b]eS26
Q [auth Z]eS24
P [auth Y]uS12
O [auth X]uS8
N [auth W]eS21---
M [auth P]uS11
L [auth O]uS15
K [auth M]uS17
J [auth K]uS4
18S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth J]IPR001047Small ribosomal subunit protein eS8Family
I [auth J]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
I [auth J]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth J]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
H [auth I]IPR000554Small ribosomal subunit protein eS7Family
H [auth I]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
G [auth H]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth H]IPR001377Small ribosomal subunit protein eS6Family
G [auth H]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
IPR002942RNA-binding S4 domainDomain
IPR013845Small ribosomal subunit protein eS4, central regionDomain
IPR000876Small ribosomal subunit protein eS4Family
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR005824KOWDomain
E [auth D]IPR005711Small ribosomal subunit protein uS5, eukaryota_archaeaFamily
E [auth D]IPR000851Small ribosomal subunit protein uS5Family
E [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
QA [auth 8]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
QA [auth 8]IPR000717Proteasome component (PCI) domainDomain
QA [auth 8]IPR016024Armadillo-type foldHomologous Superfamily
QA [auth 8]IPR040750eIF3 subunit M, C-terminal helix domainDomain
QA [auth 8]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
QA [auth 8]IPR027528Eukaryotic translation initiation factor 3 subunit MFamily
PA [auth 7]IPR000717Proteasome component (PCI) domainDomain
PA [auth 7]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
PA [auth 7]IPR019382Translation initiation factor 3 complex subunit LFamily
OA [auth 6]IPR016024Armadillo-type foldHomologous Superfamily
OA [auth 6]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
OA [auth 6]IPR033464CSN8/PSMD8/EIF3KDomain
OA [auth 6]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
OA [auth 6]IPR016020Translation initiation factor 3, subunit 12, N-terminal, eukaryoticHomologous Superfamily
OA [auth 6]IPR000717Proteasome component (PCI) domainDomain
OA [auth 6]IPR009374Eukaryotic translation initiation factor 3 subunit KFamily
NA [auth 5]IPR037518MPN domainDomain
NA [auth 5]IPR027524Eukaryotic translation initiation factor 3 subunit HFamily
NA [auth 5]IPR045810eIF3h, C-terminalDomain
NA [auth 5]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
NA [auth 5]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
D [auth C]IPR001593Small ribosomal subunit protein eS1Family
D [auth C]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
D [auth C]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
MA [auth 4]IPR027531Eukaryotic translation initiation factor 3 subunit FFamily
MA [auth 4]IPR024969EIF3F/CSN6-like, C-terminalDomain
MA [auth 4]IPR037518MPN domainDomain
MA [auth 4]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
LA [auth 3]IPR016650Eukaryotic translation initiation factor 3 subunit EFamily
LA [auth 3]IPR019010Eukaryotic translation initiation factor 3 subunit E, N-terminalDomain
LA [auth 3]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
LA [auth 3]IPR000717Proteasome component (PCI) domainDomain
KA [auth 2]IPR008905Eukaryotic translation initiation factor 3 subunit C, N-terminal domainDomain
KA [auth 2]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
KA [auth 2]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
KA [auth 2]IPR027516Eukaryotic translation initiation factor 3 subunit CFamily
KA [auth 2]IPR000717Proteasome component (PCI) domainDomain
KA [auth 2]IPR058999EIF3CL-like, C-terminal domainDomain
JA [auth 1]IPR027512Eukaryotic translation initiation factor 3 subunit AFamily
JA [auth 1]IPR000717Proteasome component (PCI) domainDomain
JA [auth 1]IPR054711eIF3a, PCI domain, TPR-like regionDomain
IA [auth h]IPR019775WD40 repeat, conserved siteConserved Site
IA [auth h]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IA [auth h]IPR045223Small ribosomal subunit protein RACK1-likeFamily
IA [auth h]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IA [auth h]IPR001680WD40 repeatRepeat
IA [auth h]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HA [auth g]IPR019954Ubiquitin conserved siteConserved Site
HA [auth g]IPR000626Ubiquitin-like domainDomain
HA [auth g]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
HA [auth g]IPR002906Small ribosomal subunit protein eS31Domain
HA [auth g]IPR019956Ubiquitin domainDomain
HA [auth g]IPR050158Ubiquitin and ubiquitin-likeFamily
HA [auth g]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
HA [auth g]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth e]IPR001209Small ribosomal subunit protein uS14Family
GA [auth e]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
GA [auth e]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
GA [auth e]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
FA [auth d]IPR028626Ribosomal protein eS28 conserved siteConserved Site
FA [auth d]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FA [auth d]IPR000289Small ribosomal subunit protein eS28Family
EA [auth a]IPR004977Small ribosomal subunit protein eS25Family
EA [auth a]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
DA [auth V]IPR001848Small ribosomal subunit protein uS10Family
DA [auth V]IPR027486Small ribosomal subunit protein uS10 domainDomain
DA [auth V]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
DA [auth V]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
DA [auth V]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
C [auth B]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
C [auth B]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
C [auth B]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
C [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth B]IPR001865Small ribosomal subunit protein uS2Family
C [auth B]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
CA [auth U]IPR001266Small ribosomal subunit protein eS19Family
CA [auth U]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
CA [auth U]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
CA [auth U]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
BA [auth T]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
BA [auth T]IPR001892Small ribosomal subunit protein uS13Family
BA [auth T]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
BA [auth T]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
AA [auth S]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
AA [auth S]IPR001210Small ribosomal subunit protein eS17Family
AA [auth S]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
Z [auth R]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Z [auth R]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Z [auth R]IPR000754Small ribosomal subunit protein uS9Family
Z [auth R]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Y [auth Q]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
Y [auth Q]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Y [auth Q]IPR002222Small ribosomal subunit protein uS19Family
Y [auth Q]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
X [auth N]IPR000530Small ribosomal subunit protein eS12Family
X [auth N]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
X [auth N]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
X [auth N]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
W [auth L]IPR037447Small ribosomal subunit protein eS10Family
W [auth L]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
W [auth L]IPR005326Plectin/eS10, N-terminalDomain
V [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
V [auth G]IPR000235Small ribosomal subunit protein uS7Family
V [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
V [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain
V [auth G]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
U [auth E]IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
U [auth E]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
U [auth E]IPR057258Small ribosomal subunit protein uS3Family
U [auth E]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
U [auth E]IPR004044K Homology domain, type 2Domain
U [auth E]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
U [auth E]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
U [auth E]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
T [auth f]IPR039415Ubiquitin-like protein FUBIDomain
T [auth f]IPR019956Ubiquitin domainDomain
T [auth f]IPR019954Ubiquitin conserved siteConserved Site
T [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
T [auth f]IPR000626Ubiquitin-like domainDomain
T [auth f]IPR006846Small ribosomal subunit protein eS30Family
S [auth c]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
S [auth c]IPR000592Small ribosomal subunit protein eS27Family
S [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
R [auth b]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
R [auth b]IPR000892Small ribosomal subunit protein eS26Family
R [auth b]IPR047864Ribosomal protein eS26, conserved siteConserved Site
Q [auth Z]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
Q [auth Z]IPR001976Small ribosomal subunit protein eS24Family
Q [auth Z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth Z]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
P [auth Y]IPR006032Small ribosomal subunit protein uS12Family
P [auth Y]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth Y]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
O [auth X]IPR000630Small ribosomal subunit protein uS8Family
O [auth X]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
O [auth X]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
M [auth P]IPR001971Small ribosomal subunit protein uS11Family
M [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
M [auth P]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth O]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
L [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
L [auth O]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
L [auth O]IPR000589Small ribosomal subunit protein uS15Family
K [auth M]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth M]IPR000266Small ribosomal subunit protein uS17Family
K [auth M]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
K [auth M]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
J [auth K]IPR002942RNA-binding S4 domainDomain
J [auth K]IPR022801Small ribosomal subunit protein uS4Family
J [auth K]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
J [auth K]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth K]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth K]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily