ClpAP Disengaged State bound to RepA-GFP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| T [auth F] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038758 | 3002019 | SCOP2B (2022-06-29) |
| T [auth F] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038757 | 3002019 | SCOP2B (2022-06-29) |
| S [auth E] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038758 | 3002019 | SCOP2B (2022-06-29) |
| S [auth E] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038757 | 3002019 | SCOP2B (2022-06-29) |
| R [auth D] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038757 | 3002019 | SCOP2B (2022-06-29) |
| R [auth D] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038758 | 3002019 | SCOP2B (2022-06-29) |
| Q [auth C] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038758 | 3002019 | SCOP2B (2022-06-29) |
| Q [auth C] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038757 | 3002019 | SCOP2B (2022-06-29) |
| P [auth B] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038757 | 3002019 | SCOP2B (2022-06-29) |
| P [auth B] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038758 | 3002019 | SCOP2B (2022-06-29) |
| O [auth A] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038757 | 3002019 | SCOP2B (2022-06-29) |
| O [auth A] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8038758 | 3002019 | SCOP2B (2022-06-29) |
| N [auth T] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| M [auth S] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| L [auth R] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| K [auth Q] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| J [auth P] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| I [auth O] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| H [auth N] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| G [auth M] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| F [auth L] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| E [auth K] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| D [auth J] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| C [auth I] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| B [auth H] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
| A [auth G] | SCOP2B Superfamily | ClpP/crotonase | 8034397 | 3000033 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| T [auth F] | ClpB_D2-small | e6w20F1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
| T [auth F] | chaperone_ClpB | e6w20F3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
| T [auth F] | Sigma54_activat | e6w20F2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
| S [auth E] | ClpB_D2-small | e6w20E4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
| S [auth E] | chaperone_ClpB | e6w20E3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
| S [auth E] | Sigma54_activat | e6w20E1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
| R [auth D] | ClpB_D2-small | e6w20D1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
| R [auth D] | chaperone_ClpB | e6w20D4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
| R [auth D] | Sigma54_activat | e6w20D3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
| Q [auth C] | ClpB_D2-small | e6w20C3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
| Q [auth C] | chaperone_ClpB | e6w20C1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
| Q [auth C] | Sigma54_activat | e6w20C4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
| P [auth B] | ClpB_D2-small | e6w20B4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
| P [auth B] | chaperone_ClpB | e6w20B2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
| P [auth B] | Sigma54_activat | e6w20B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
| O [auth A] | ClpB_D2-small | e6w20A3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
| O [auth A] | chaperone_ClpB | e6w20A1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
| O [auth A] | Sigma54_activat | e6w20A2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
| N [auth T] | CLP_protease | e6w20T1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| M [auth S] | CLP_protease | e6w20S1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| L [auth R] | CLP_protease | e6w20R1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| K [auth Q] | CLP_protease | e6w20Q1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| J [auth P] | CLP_protease | e6w20P1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| I [auth O] | CLP_protease | e6w20O1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| H [auth N] | CLP_protease | e6w20N1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| G [auth M] | CLP_protease | e6w20M1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| F [auth L] | CLP_protease | e6w20L1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| E [auth K] | CLP_protease | e6w20K1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| D [auth J] | CLP_protease | e6w20J1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| C [auth I] | CLP_protease | e6w20I1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| B [auth H] | CLP_protease | e6w20H1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
| A [auth G] | CLP_protease | e6w20G1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: CLP_protease | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF10431 | C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) | C-terminal, D2-small domain, of ClpB protein | This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 ... | Domain | |
| PF17871 | AAA lid domain (AAA_lid_9) | AAA lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
| PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
| PF07724 | AAA domain (Cdc48 subfamily) (AAA_2) | AAA domain (Cdc48 subfamily) | This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. | Domain | |
| PF00574 | Clp protease (CLP_protease) | Clp protease | The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR001270 | ClpA/B family | Family | |
| IPR018368 | ClpA/B, conserved site 1 | Conserved Site | |
| IPR041546 | ClpA/ClpB, AAA lid domain | Domain | |
| IPR004176 | Clp, repeat (R) N-terminal domain | Domain | |
| IPR050130 | ATP-dependent Clp protease/Chaperone ClpA/ClpB | Family | |
| IPR028299 | ClpA/B, conserved site 2 | Conserved Site | |
| IPR003593 | AAA+ ATPase domain | Domain | |
| IPR003959 | ATPase, AAA-type, core | Domain | |
| IPR013461 | ATP-dependent Clp protease ATP-binding subunit ClpA | Family | |
| IPR019489 | Clp ATPase, C-terminal | Domain | |
| IPR036628 | Clp, N-terminal domain superfamily | Homologous Superfamily | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
| IPR029045 | ClpP/crotonase-like domain superfamily | Homologous Superfamily | |
| IPR001907 | ATP-dependent Clp protease proteolytic subunit | Family | |
| IPR018215 | ClpP, Ser active site | Active Site | |
| IPR023562 | Clp protease proteolytic subunit /Translocation-enhancing protein TepA | Family | |
| IPR033135 | ClpP, histidine active site | Active Site |














