6VWU

X-ray structure of ALKS 4230, a fusion of circularly permuted human Interleukin-2 and Interleukin-2 Receptor alpha

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Sushi/CCP/SCR domain	8037669	3000902	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Sushi/CCP/SCR domain	8037668	3000902	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	IL2	e6vwuA3	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: 4-helical cytokines (From Topology)	T: 4-helical cytokines	F: IL2	ECOD (1.6)
A	Sushi_4	e6vwuA2	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: Complement control module/SCR domain	F: Sushi_4	ECOD (1.6)
A	Sushi_3	e6vwuA1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: Complement control module/SCR domain	F: Sushi_3	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00715	Interleukin 2 (IL2)	Interleukin 2	-	Domain
A	PF00084	Sushi repeat (SCR repeat) (Sushi)	Sushi repeat (SCR repeat)	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Interleukin-2,Interleukin-2 receptor subunit alpha	protein binding binding growth factor binding cytokine binding interleukin-2 binding molecular transducer activity interleukin-2 receptor activity transmembrane signaling receptor activity signaling receptor activity cytokine receptor activity immune receptor activity molecular function activator activity signaling receptor binding molecular function regulator activity protein binding binding growth factor binding cytokine binding interleukin-2 binding molecular transducer activity interleukin-2 receptor activity transmembrane signaling receptor activity signaling receptor activity cytokine receptor activity immune receptor activity molecular function activator activity signaling receptor binding molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity enzyme regulator activity kinase activator activity enzyme activator activity kinase regulator activity kappa-type opioid receptor binding G protein-coupled receptor binding opioid receptor binding cytokine receptor binding growth factor receptor binding interleukin-2 receptor binding glycosphingolipid binding sphingolipid binding lipid binding glycolipid binding carbohydrate derivative binding carbohydrate binding cytokine activity	multicellular organismal process regulation of cellular process positive regulation of cell population proliferation regulation of leukocyte activation regulation of cell activation positive regulation of cell activation T cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of immune system process positive regulation of immune system process regulation of leukocyte proliferation regulation of biological process cell population proliferation multicellular organismal process regulation of cellular process positive regulation of cell population proliferation regulation of leukocyte activation regulation of cell activation positive regulation of cell activation T cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of immune system process positive regulation of immune system process regulation of leukocyte proliferation regulation of biological process cell population proliferation positive regulation of T cell activation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation positive regulation of activated T cell proliferation regulation of cell population proliferation mononuclear cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte proliferation positive regulation of multicellular organismal process regulation of activated T cell proliferation positive regulation of biological process positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation activated T cell proliferation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of mononuclear cell proliferation regulation of multicellular organismal process regulation of cell-cell adhesion positive regulation of cellular process T cell proliferation regulation of lymphocyte proliferation positive regulation of cell adhesion regulation of cell adhesion biological regulation cell activation regulation of T cell activation regulation of T cell proliferation immune system process regulation of mononuclear cell proliferation cellular process regulation of lymphocyte activation regulation of alpha-beta T cell activation regulation of alpha-beta T cell proliferation alpha-beta T cell proliferation CD4-positive, alpha-beta T cell activation alpha-beta T cell activation CD4-positive, alpha-beta T cell proliferation regulation of CD4-positive, alpha-beta T cell proliferation regulation of CD4-positive, alpha-beta T cell activation cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling signal transduction cell communication defense response immune response response to stress inflammatory response inflammatory response to antigenic stimulus response to organic substance interleukin-2-mediated signaling pathway cellular response to interleukin-2 response to cytokine cytokine-mediated signaling pathway response to interleukin-2 cellular response to chemical stimulus response to chemical cellular response to cytokine stimulus cellular response to organic substance homeostatic process T cell homeostatic proliferation T cell homeostasis multicellular organismal-level homeostasis regulation of T cell homeostatic proliferation leukocyte homeostasis homeostasis of number of cells lymphocyte homeostasis apoptotic process cell death programmed cell death regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response negative regulation of response to stimulus negative regulation of biological process response to external stimulus regulation of inflammatory response regulation of response to stimulus negative regulation of response to external stimulus regulation of response to stress negative regulation of defense response immune system development developmental process T cell tolerance induction multicellular organism development anatomical structure development regulation of tolerance induction regulation of T cell tolerance induction tolerance induction system development negative regulation of lymphocyte proliferation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion negative regulation of cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation negative regulation of lymphocyte activation negative regulation of mononuclear cell proliferation negative regulation of cellular process negative regulation of cell population proliferation negative regulation of cell activation negative regulation of immune system process Notch signaling pathway leukocyte apoptotic process lymphocyte apoptotic process activation-induced cell death of T cells T cell apoptotic process regulation of leukocyte differentiation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation positive regulation of T cell differentiation regulation of cell development positive regulation of developmental process cell differentiation T cell differentiation positive regulation of cell development leukocyte differentiation cellular developmental process regulation of developmental process cell development regulation of T cell differentiation positive regulation of hemopoiesis positive regulation of cell differentiation regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains B cell activation involved in immune response positive regulation of macromolecule biosynthetic process regulation of primary metabolic process heterocycle metabolic process positive regulation of immune response organic substance biosynthetic process positive regulation of macromolecule metabolic process positive regulation of DNA recombination positive regulation of immunoglobulin mediated immune response cellular metabolic process DNA recombination cellular nitrogen compound metabolic process primary metabolic process DNA metabolic process immune effector process regulation of gene expression biosynthetic process positive regulation of DNA metabolic process B cell mediated immunity positive regulation of production of molecular mediator of immune response regulation of macromolecule biosynthetic process metabolic process regulation of DNA metabolic process immunoglobulin production positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains somatic cell DNA recombination positive regulation of cellular metabolic process somatic diversification of immunoglobulins involved in immune response somatic recombination of immunoglobulin gene segments positive regulation of biosynthetic process regulation of immunoglobulin mediated immune response leukocyte activation involved in immune response regulation of B cell activation positive regulation of isotype switching nitrogen compound metabolic process positive regulation of immune effector process production of molecular mediator of immune response positive regulation of immunoglobulin production regulation of isotype switching regulation of macromolecule metabolic process macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process positive regulation of gene expression somatic diversification of immune receptors via germline recombination within a single locus cellular aromatic compound metabolic process positive regulation of cellular biosynthetic process lymphocyte mediated immunity regulation of immune effector process regulation of DNA recombination positive regulation of leukocyte mediated immunity cell activation involved in immune response nucleobase-containing compound metabolic process regulation of nitrogen compound metabolic process positive regulation of metabolic process leukocyte mediated immunity somatic diversification of immune receptors regulation of nucleobase-containing compound metabolic process positive regulation of adaptive immune response somatic recombination of immunoglobulin genes involved in immune response positive regulation of nucleobase-containing compound metabolic process regulation of adaptive immune response regulation of cellular metabolic process regulation of B cell mediated immunity somatic diversification of immunoglobulins organic cyclic compound metabolic process regulation of leukocyte mediated immunity regulation of immune response regulation of production of molecular mediator of immune response macromolecule metabolic process regulation of metabolic process isotype switching immunoglobulin production involved in immunoglobulin-mediated immune response positive regulation of lymphocyte mediated immunity cellular biosynthetic process positive regulation of B cell mediated immunity positive regulation of response to stimulus regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains organic substance metabolic process positive regulation of isotype switching to IgG isotypes lymphocyte activation involved in immune response regulation of biosynthetic process B cell activation gene expression adaptive immune response immunoglobulin mediated immune response positive regulation of B cell activation regulation of isotype switching to IgG isotypes regulation of lymphocyte mediated immunity regulation of immunoglobulin production positive regulation of nitrogen compound metabolic process isotype switching to IgG isotypes positive regulation of response to external stimulus positive regulation of inflammatory response positive regulation of defense response regulation of protein modification process regulation of protein phosphorylation negative regulation of nitrogen compound metabolic process negative regulation of phosphate metabolic process negative regulation of cellular metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process protein metabolic process protein modification process phosphorus metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process organonitrogen compound metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of metabolic process negative regulation of protein phosphorylation macromolecule modification negative regulation of phosphorus metabolic process regulation of phosphorylation regulation of phosphorus metabolic process negative regulation of phosphorylation cell-cell signaling mature B cell differentiation positive regulation of B cell differentiation regulation of plasma cell differentiation positive regulation of plasma cell differentiation plasma cell differentiation regulation of B cell differentiation B cell differentiation mature B cell differentiation involved in immune response cell projection organization positive regulation of dendritic spine development regulation of dendritic spine development neuron projection development cellular component organization neurogenesis neuron differentiation dendrite development cellular component organization or biogenesis dendritic spine development plasma membrane bounded cell projection organization nervous system development generation of neurons neuron development signal transduction in absence of ligand extrinsic apoptotic signaling pathway apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand positive regulation of tissue remodeling tissue remodeling regulation of tissue remodeling natural killer cell activation positive regulation of B cell proliferation regulation of B cell proliferation B cell proliferation DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process aromatic compound biosynthetic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription positive regulation of DNA-templated transcription RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process heterocycle biosynthetic process positive regulation of RNA biosynthetic process regulation of leukocyte apoptotic process regulation of lymphocyte apoptotic process regulation of B cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process B cell apoptotic process regulation of programmed cell death negative regulation of B cell apoptotic process negative regulation of apoptotic process negative regulation of leukocyte apoptotic process negative regulation of lymphocyte apoptotic process regulation of growth regulation of cellular component organization growth positive regulation of cell growth regulation of cell growth cell growth positive regulation of growth positive regulation of cytosolic calcium ion concentration regulation of biological quality positive regulation of regulatory T cell differentiation regulation of regulatory T cell differentiation regulatory T cell differentiation protein kinase C-activating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway response to alcohol response to oxygen-containing compound response to ethanol response to tacrolimus response to organonitrogen compound response to nitrogen compound response to organic cyclic compound positive regulation of phosphorylation positive regulation of phosphate metabolic process peptidyl-amino acid modification positive regulation of protein phosphorylation tyrosine phosphorylation of STAT protein positive regulation of phosphorus metabolic process cell surface receptor signaling pathway via STAT positive regulation of protein metabolic process peptidyl-tyrosine modification positive regulation of peptidyl-tyrosine phosphorylation positive regulation of protein modification process regulation of tyrosine phosphorylation of STAT protein regulation of peptidyl-tyrosine phosphorylation positive regulation of tyrosine phosphorylation of STAT protein peptidyl-tyrosine phosphorylation cell surface receptor signaling pathway via JAK-STAT cytokine production regulation of cytokine production interleukin-17 production regulation of interleukin-17 production positive regulation of interleukin-17 production positive regulation of cytokine production alpha-beta T cell differentiation involved in immune response negative regulation of T cell differentiation regulation of T-helper cell differentiation T-helper cell differentiation negative regulation of leukocyte differentiation negative regulation of immune effector process negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains T-helper 17 cell differentiation negative regulation of T-helper 17 cell differentiation CD4-positive, alpha-beta T cell differentiation alpha-beta T cell differentiation T cell activation involved in immune response negative regulation of cell differentiation regulation of T-helper 17 cell differentiation negative regulation of developmental process negative regulation of T-helper 17 type immune response negative regulation of cell development negative regulation of alpha-beta T cell activation CD4-positive, alpha-beta T cell differentiation involved in immune response negative regulation of hemopoiesis negative regulation of immune response negative regulation of adaptive immune response negative regulation of CD4-positive, alpha-beta T cell activation negative regulation of lymphocyte differentiation negative regulation of CD4-positive, alpha-beta T cell differentiation regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation negative regulation of alpha-beta T cell differentiation alpha-beta T cell activation involved in immune response regulation of T-helper 17 type immune response T cell differentiation involved in immune response negative regulation of T-helper cell differentiation T-helper 17 type immune response regulation of type II interferon production type II interferon production positive regulation of type II interferon production	cell periphery cell surface membrane plasma membrane cellular anatomical entity external side of plasma membrane side of membrane protein-containing complex plasma membrane protein complex plasma membrane signaling receptor complex membrane protein complex interleukin-2 receptor complex receptor complex extracellular region cell periphery cell surface membrane plasma membrane cellular anatomical entity external side of plasma membrane side of membrane protein-containing complex plasma membrane protein complex plasma membrane signaling receptor complex membrane protein complex interleukin-2 receptor complex receptor complex extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR015486	Interleukin-2 receptor alpha	Family
A	IPR000436	Sushi/SCR/CCP domain	Domain
A	IPR035976	Sushi/SCR/CCP superfamily	Homologous Superfamily
A	IPR000779	Interleukin-2	Family
A	IPR030477	Interleukin-2, conserved site	Conserved Site
A	IPR009079	Four-helical cytokine-like, core	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P60568	rheumatoid arthritis immunodeficiency due to CD25 deficiency Crohn disease alopecia areata HIV infectious disease juvenile idiopathic arthritis type 1 diabetes mellitus glomerulonephritis type 1 diabetes mellitus 10 multiple sclerosis oligoarticular juvenile idiopathic arthritis malignant mesothelioma chronic beryllium disease schizophrenia allergic contact dermatitis rheumatoid arthritis immunodeficiency due to CD25 deficiency Crohn disease alopecia areata HIV infectious disease juvenile idiopathic arthritis type 1 diabetes mellitus glomerulonephritis type 1 diabetes mellitus 10 multiple sclerosis oligoarticular juvenile idiopathic arthritis malignant mesothelioma chronic beryllium disease schizophrenia allergic contact dermatitis Regional enteritis sclerosing cholangitis Graves disease acquired metabolic disease allergic rhinitis atopic eczema major depressive disorder psoriasis relapsing-remitting multiple sclerosis rheumatoid factor-negative juvenile idiopathic arthritis glioblastoma Hashimoto thyroiditis vitiligo hypothyroidism acute myeloid leukemia inflammatory bowel disease large cell medulloblastoma atypical teratoid rhabdoid tumor neuroblastoma ovarian cancer Crohn's colitis diabetes mellitus ileocolitis interstitial cystitis asthma lung adenocarcinoma autoimmune disease marginal zone lymphoma common variable immunodeficiency non-small cell lung carcinoma primary cutaneous T-cell lymphoma cancer leukopenia glomerulonephritis autoimmune hepatitis adult T-cell leukemia/lymphoma glioblastoma melanoma nephrotic syndrome Neoplasms, Experimental dissociative amnesia allergic contact dermatitis rheumatoid arthritis alopecia areata giant cell glioblastoma liver cancer anemia prostate cancer leukemia AIDS major depressive disorder asthma urinary bladder cancer HIV infectious disease autoimmune disease neutropenia influenza paranoid schizophrenia pneumonia kidney disease COVID-19 adult acute respiratory distress syndrome liver neoplasm lymphatic system disease arthritic joint disease autism urinary bladder neoplasm brain cancer inborn carbohydrate metabolic disorder brain injury peripheral nervous system disease juvenile idiopathic arthritis kidney neoplasm cutaneous melanoma lung benign neoplasm allergic disease schizophrenia lymphopenia systemic lupus erythematosus tuberculosis vaginal cancer benign neoplasm hypotensive disorder inflammatory bowel disease peripheral neuropathy breast disease kidney cancer celiac disease acute T cell leukemia diarrheal disease liver disease endogenous depression allergic rhinitis amnestic disorder skin disease

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.