6VWQ | pdb_00006vwq

X-ray crystal structure of clavaminate synthase with vanadyl, succinate, and deoxyproclavaminic acid

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6vwqa1	All beta proteins	Double-stranded beta-helix	Clavaminate synthase-like	Clavaminate synthase	automated matches	(Streptomyces antibioticus ) [TaxId: 1890 ],	SCOPe (2.08)
A	d6vwqa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces antibioticus ) [TaxId: 1890 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Clavaminate synthase	8102672	4002877	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Clavaminate synthase-like	8102673	3001848	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PALP	e6vwqA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PALP	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Clavaminate synthase 3	oxidoreductase activity catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	antibiotic metabolic process biosynthetic process metabolic process cellular process antibiotic biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR003819	TauD/TfdA-like domain	Domain
A	IPR050411	Alpha-ketoglutarate-dependent hydroxylases	Family
A	IPR053503	Clavaminate Synthase	Family
A	IPR014503	Clavaminate synthase-like	Family
A	IPR042098	Glutarate 2-hydroxylase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.