6VWP | pdb_00006vwp

Crystal structure of E. coli guanosine kinase in complex with ppGpp


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HFer4+Fer4_7e6vwpH1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Fer4+Fer4_7ECOD (v294.1)
GFAD_binding_3, Pyr_redox_3e6vwpG1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: FAD_binding_3, Pyr_redox_3ECOD (v294.1)
FFAD_binding_3, Pyr_redox_3e6vwpF1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: FAD_binding_3, Pyr_redox_3ECOD (v294.1)
EFAD_binding_3, Pyr_redox_3e6vwpE1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: FAD_binding_3, Pyr_redox_3ECOD (v294.1)
DFer4+Fer4_7e6vwpD1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Fer4+Fer4_7ECOD (v294.1)
CFAD_binding_3, Pyr_redox_3e6vwpC1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: FAD_binding_3, Pyr_redox_3ECOD (v294.1)
BFAD_binding_3, Pyr_redox_3e6vwpB1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: FAD_binding_3, Pyr_redox_3ECOD (v294.1)
AFer4+Fer4_7e6vwpA1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Fer4+Fer4_7ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00294pfkB family carbohydrate kinase (PfkB)pfkB family carbohydrate kinaseThis family includes a variety of carbohydrate and pyrimidine kinases. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Inosine-guanosine kinase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR011611Carbohydrate kinase PfkBDomain
A, B, C, D, E
IPR002173Carbohydrate/purine kinase, PfkB, conserved siteConserved Site
A, B, C, D, E
IPR046405Guanosine-inosine kinaseFamily
A, B, C, D, E
IPR052700Carbohydrate kinase PfkB-likeFamily
A, B, C, D, E
IPR029056Ribokinase-likeHomologous Superfamily