Annotations: 6VPD

Crystal structure of Trgpx in apo form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6vpdb_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Trichoderma reesei QM6a ) [TaxId: 431241 ],	SCOPe (2.08)
A	d6vpda_	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Trichoderma reesei QM6a ) [TaxId: 431241 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	LRR_1,LRR_8	e6vpdB1	A: beta barrels	X: cradle loop barrel	H: N-terminal domain of poxin	T: N-terminal domain of poxin	F: LRR_1,LRR_8	ECOD (v294.2)
A	LRR_1,LRR_8	e6vpdA1	A: beta barrels	X: cradle loop barrel	H: N-terminal domain of poxin	T: N-terminal domain of poxin	F: LRR_1,LRR_8	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00255	Glutathione peroxidase (GSHPx)	Glutathione peroxidase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Glutathione peroxidase	peroxidase activity oxidoreductase activity thioredoxin-dependent peroxiredoxin activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor thioredoxin peroxidase activity catalytic activity peroxiredoxin activity	catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process cell redox homeostasis cellular homeostasis homeostatic process cellular response to stimulus cellular detoxification of hydrogen peroxide detoxification of inorganic compound response to stimulus detoxification catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process cell redox homeostasis cellular homeostasis homeostatic process cellular response to stimulus cellular detoxification of hydrogen peroxide detoxification of inorganic compound response to stimulus detoxification cellular response to oxidative stress cellular response to chemical stress cellular oxidant detoxification response to hydrogen peroxide cellular response to reactive oxygen species cellular response to stress response to stress cellular detoxification response to oxygen-containing compound cellular response to oxygen-containing compound response to reactive oxygen species cellular response to hydrogen peroxide response to toxic substance response to oxidative stress cellular response to chemical stimulus response to chemical detoxification of hydrogen peroxide cellular response to toxic substance	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR029759	Glutathione peroxidase active site	Active Site
A, B	IPR013766	Thioredoxin domain	Domain
A, B	IPR000889	Glutathione peroxidase	Family
A, B	IPR029760	Glutathione peroxidase conserved site	Conserved Site
A, B	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.