6VNW | pdb_00006vnw

Cryo-EM structure of apo-BBSome


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth E]TPR_15e6vnwE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_15ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth I]PF23339PTHB1 C-terminal helix bundle (PTHB1_CtH)PTHB1 C-terminal helix bundleThis entry represents the C-terminal helix bundle (CtH) found in PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding ...This entry represents the C-terminal helix bundle (CtH) found in PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding subunit of IFT38 C-terminal domain, which assists the BBSome in some of its roles [1].
Domain
G [auth I]PF23337PTHB1 platform domain (PTHB1_pf)PTHB1 platform domainThis entry represents the platform domain of PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding subunit of IFT38 C-t ...This entry represents the platform domain of PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding subunit of IFT38 C-terminal domain, which assists the BBSome in some of its roles [1].
Domain
G [auth I]PF23338PTHB1 hairpin (PTHB1_hp)PTHB1 hairpinThis entry represents a hairpin domain found in PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding subunit of IFT38 ...This entry represents a hairpin domain found in PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding subunit of IFT38 C-terminal domain, which assists the BBSome in some of its roles [1].
Domain
PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
PF13424Tetratricopeptide repeat (TPR_12)Tetratricopeptide repeat- Repeat
E [auth C]PF23743BBS7 beta-propeller (Beta-prop_BBS7)BBS7 beta-propeller- Repeat
E [auth C]PF23360BBS7 GAE domain (BBS7_GAE)BBS7 GAE domainThis entry represents the gamma-adaptin ear (GAE) domain of BBS7. BBS7 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. The BBSome complex is required for ...This entry represents the gamma-adaptin ear (GAE) domain of BBS7. BBS7 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. The BBSome complex is required for ciliogenesis, as well as the assembly and movement of intraflagellar transport proteins along the ciliary membrane [1-3].
Domain
E [auth C]PF23361BBS7 platform domain (BBS7_pf)BBS7 platform domainThis entry represents the platform domain of BBS7. BBS7 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. BBSome complex is required for ciliogenesis and th ...This entry represents the platform domain of BBS7. BBS7 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. BBSome complex is required for ciliogenesis and the assembly and movement of intraflagellar transport proteins along the ciliary membrane [1-3].
Domain
E [auth C]PF23349BBS7 hairpin (BBS7_hp)BBS7 hairpinThis entry represents a hairpin domain found at the C-terminal of Bardet-Biedl syndrome 7 (BBS7) proteins from animals. This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. BBS7 is the BBSome subunit responsible fo ...This entry represents a hairpin domain found at the C-terminal of Bardet-Biedl syndrome 7 (BBS7) proteins from animals. This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. BBS7 is the BBSome subunit responsible for the binding to SMO H8 [1].
Domain
C [auth E]PF14559Tetratricopeptide repeat (TPR_19)Tetratricopeptide repeat- Repeat
C [auth E]PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
C [auth E]PF13414TPR repeat (TPR_11)TPR repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth D]BBS1 domain-containing protein---
G [auth I]Bardet-Biedl syndrome 9-
Tetratricopeptide repeat domain 8
E [auth C]Bardet-Biedl syndrome 7 protein homolog-
D [auth G]Bardet-Biedl syndrome 5 protein homolog
C [auth E]Bardet-Biedl syndrome 4 protein homolog
Bardet-Biedl syndrome 2 protein homolog-
A [auth H]Bardet-Biedl syndrome 18 protein-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth I]IPR026511Parathyroid hormone-responsive B1Family
G [auth I]IPR055364PTHB1, C-terminal helix bundle domainDomain
G [auth I]IPR055362PTHB1, platform domainDomain
G [auth I]IPR028074PTHB1, GAE domainDomain
G [auth I]IPR028073PTHB1, N-terminal domainDomain
G [auth I]IPR055363PTHB1, hairpin domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR019734Tetratricopeptide repeatRepeat
IPR028796Tetratricopeptide repeat protein 8Family
E [auth C]IPR056332BBS7, beta-propellerDomain
E [auth C]IPR056334BBS7, GAE domainDomain
E [auth C]IPR056333BBS7, platform domainDomain
E [auth C]IPR016575Bardet-Biedl syndrome 7 proteinFamily
E [auth C]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth C]IPR056335BBS7, helical hairpinDomain
E [auth C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D [auth G]IPR030804BBSome complex member BBS5/sex-determination protein fem-3Family
D [auth G]IPR011993PH-like domain superfamilyHomologous Superfamily
D [auth G]IPR014003BBSome complex member BBS5, PH domainDomain
D [auth G]IPR006606BBSome complex member BBS5Family
C [auth E]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C [auth E]IPR019734Tetratricopeptide repeatRepeat
IPR029429Ciliary BBSome complex subunit 2, middle regionDomain
IPR055380BBS2, hairpin domainDomain
IPR016616Bardet-Biedl syndrome 2 proteinFamily
IPR055381BBS2, C-terminal helix bundle domainDomain
IPR029430Ciliary BBSome complex subunit 2, N-terminalDomain
IPR029333BBS2, GAE domainDomain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR055379BBS2, platform domainDomain
A [auth H]IPR028233Cilia BBSome complex subunit 10Family